RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 IQCF3P0C7M6 154 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ZDHHC11BP0C7U3 371 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CYP11B1P15538 503 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 COL8A1P27658 744 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 HOXC8P31273 242 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 AHRP35869 848 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ARL3P36405 182 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 PLA2G5P39877 138 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 VHLP40337 213 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MAP3K8P41279 467 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MC3RP41968 323 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 KIR2DL1P43626 348 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 KIR2DL2P43627 348 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 LIMS1P48059 325 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 KCNC1P48547 511 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CDH13P55290 713 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ITGA1P56199 1179 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 TNNC1P63316 161 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 SCGB2A2Q13296 93 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MTM1Q13496 603 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 NAE1Q13564 534 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 HEPACAMQ14CZ8 416 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CCL15Q16663 113 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 AP5B1Q2VPB7 878 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 RUNDC3AQ59EK9 446 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ARMCX4Q5H9R4 360 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 EOGTQ5NDL2 527 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 DCST1Q5T197 706 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CCNYL2Q5T2Q4 361 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ATG9BQ674R7 924 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MRNIPQ6NTE8 343 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM180AQ6UWF9 173 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MAMDC4Q6UXC1 1216 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CYS1Q717R9 158 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 BCL6BQ8N143 479 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 UBE2J2Q8N2K1 259 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 LILRA3Q8N6C8 439 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 OR10A7Q8NGE5 316 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 PSMA8Q8TAA3 256 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 TOP1MTQ969P6 601 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 S100PBPQ96BU1 408 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 NXPE2Q96DL1 559 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ZSWIM3Q96MP5 696 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 TEFMQ96QE5 360 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 KIFC1Q9BW19 673 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 TMEM39BQ9GZU3 492 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 UPF3AQ9H1J1 476 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ZCCHC4Q9H5U6 513 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 WDR55Q9H6Y2 383 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 DDX31Q9H8H2 851 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ARHGEF3Q9NR81 526 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MYEF2Q9P2K5 600 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ABCD2Q9UBJ2 740 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 PEF1Q9UBV8 284 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 NKX1-2Q9UD57 310 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 PISDQ9UG56 409 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MIOXQ9UGB7 285 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CHRNA9Q9UGM1 479 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 RWDD2AQ9UIY3 292 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 B3GNT3Q9Y2A9 372 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MTO1Q9Y2Z2 717 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 STRAPQ9Y3F4 350 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 UMODL1Q5DID0 1318 aa4.59□□□□□ -1.68
CCDC88A-209ENST00000456975 CNTNAP5Q8WYK1 1306 aa4.59□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF532Q9HCE3 1301 aa4.59□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM265A0A087WTH1 108 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A0A6YYH2 397 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM149AA5PLN7 773 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 A6NJ64 397 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ERI2A8K979 691 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 C9orf172C9J069 976 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CYR61O00622 381 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CUTAO60888 179 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 B4GALT2O60909 372 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ITGA10O75578 1167 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 IL18BPO95998 194 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DBHP09172 617 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RNH1P13489 461 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF7P17097 686 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CNR1P21554 472 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 IL1R2P27930 398 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PPP2R1BP30154 601 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 HOXA13P31271 388 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SFNP31947 248 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CSNK1EP49674 416 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PPP2CBP62714 309 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DYNLL1P63167 89 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PPP2CAP67775 309 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GPC5P78333 572 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 FOLH1Q04609 750 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DUSP8Q13202 625 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TUBB2AQ13885 445 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 IL18Q14116 193 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RCAN2Q14206 197 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CDK10Q15131 360 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RPS6KA1Q15418 735 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF568Q3ZCX4 644 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PRAMEF19Q5SWL8 479 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 KHDRBS2Q5VWX1 349 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 NAPEPLDQ6IQ20 393 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms