RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ARL9Q6T311 187 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 FAM83FQ8NEG4 500 aaPredicted RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 ELL3Q9HB65 397 aaPredicted RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 ZBTB20Q9HC78 741 aaPredicted RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 LTN1O94822 1766 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 MEOX2P50222 304 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 TMEM41BQ5BJD5 291 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 FAM199XQ6PEV8 388 aaPredicted RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 ZNF627Q7L945 461 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 LIX1Q8N485 282 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 NEURL2Q9BR09 285 aa12.81□□□□□ -0.36
USP40-208ENST00000450966 TXNL4BQ9NX01 149 aaKnown RBP12.81□□□□□ -0.36
USP40-208ENST00000450966 SPATA31D3P0C874 917 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 GXYLT1Q4G148 440 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 SPATA31D4Q6ZUB0 917 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 SSX7Q7RTT5 188 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ZNF227Q86WZ6 799 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ST7LQ8TDW4 575 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 GEMIN6Q8WXD5 167 aaKnown RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 CLEC4DQ8WXI8 215 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 RIMS3Q9UJD0 308 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 GTPBP1O00178 669 aaKnown RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 PAX6P26367 422 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 MLLT1Q03111 559 aaPredicted RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 APOFQ13790 326 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 XKR6Q5GH73 641 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 LIPKQ5VXJ0 399 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 TMEM200AQ86VY9 491 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 PXT1Q8NFP0 134 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 LINGO1Q96FE5 620 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 PDZD7Q9H5P4 517 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 A3GALT2U3KPV4 340 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 CCL16O15467 120 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 SLC43A1O75387 559 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 RPIAP49247 311 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 DUSP4Q13115 394 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 FAM189A2Q15884 450 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 POM121L1PQ3SYA9 428 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 VTCN1Q7Z7D3 282 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ADGRG2Q8IZP9 1017 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 PPP1R13LQ8WUF5 828 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 MFSD3Q96ES6 412 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 P2RY11Q96G91 374 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 NELL2Q99435 816 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 SPHK1Q9NYA1 384 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 TAS2R8Q9NYW2 309 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 FGF3P11487 239 aaPredicted RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 HNF1AP20823 631 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 LRIT3Q3SXY7 679 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ATG9BQ674R7 924 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 C22orf42Q6IC83 251 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 PRSS55Q6UWB4 352 aaPredicted RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 ADAMTS19Q8TE59 1207 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 SCARB1Q8WTV0 552 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 CHFRQ96EP1 664 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 COPS8Q99627 209 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 OR10A4Q9H209 315 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ELFN1P0C7U0 828 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 SAGP10523 405 aaPredicted RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 CYCSP99999 105 aaKnown RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 EIF4HQ15056 248 aaKnown RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 IL17AQ16552 155 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ABCA11PQ4W5N1 156 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 LRP10Q7Z4F1 713 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 MINDY1Q8N5J2 469 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 CELF2-AS1Q8N7Q2 184 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ANKLE1Q8NAG6 615 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 OR2L5Q8NG80 312 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 MUL1Q969V5 352 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 RADILQ96JH8 1075 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 TXLNGYQ9BZA5 131 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 ZNF282Q9UDV7 671 aaPredicted RBP12.8□□□□□ -0.36
USP40-208ENST00000450966 FBXL3Q9UKT7 428 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 COPS3Q9UNS2 423 aa12.8□□□□□ -0.36
USP40-208ENST00000450966 A0A0D9SG52 128 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TMEM63AO94886 807 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 HSD17B1P14061 328 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 CD47Q08722 323 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 ABHD18Q0P651 414 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 FAM209AQ5JX71 171 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 DHRS4L2Q6PKH6 230 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 BLOC1S3Q6QNY0 202 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 CRYBG2Q8N1P7 616 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 DBF4BQ8NFT6 615 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 SETD7Q8WTS6 366 aaKnown RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 BPIFA1Q9NP55 256 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 MRTO4Q9UKD2 239 aaKnown RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 SMIM18P0DKX4 95 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 DPP6P42658 865 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 PDGFRLQ15198 375 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 CRB2Q5IJ48 1285 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 EEF1DP3Q658K8 133 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 LCLAT1Q6UWP7 414 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 MON1BQ7L1V2 547 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 PHYKPLQ8IUZ5 450 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 THRSPQ92748 146 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 RAB3CQ96E17 227 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 MAGIXQ9H6Y5 334 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 RNF19AQ9NV58 838 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms