RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RYKP34925 604 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SOX18P35713 384 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SLC15A1P46059 708 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 MANFP55145 182 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 SNRPD1P62314 119 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 CSTF3Q12996 717 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 IL18R1Q13478 541 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 MRPL58Q14197 206 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 LY6G5CQ5SRR4 150 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 C22orf39Q6P5X5 142 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 TPRG1Q6ZUI0 275 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 CBLL1Q75N03 491 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 IQCF2Q8IXL9 164 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 CADM2Q8N3J6 435 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 MTERF3Q96E29 417 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 C7orf34Q96L11 122 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PRAP1Q96NZ9 151 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 DOHHQ9BU89 302 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 IRF2BPLQ9H1B7 796 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 MVB12BQ9H7P6 319 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 ANKMY1Q9P2S6 941 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PCDHGB3Q9Y5G1 929 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PCYT1BQ9Y5K3 369 aaPredicted RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 N6AMT1Q9Y5N5 214 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PLXND1Q9Y4D7 1925 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SLC28A2O43868 658 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 PRPS2P11908 318 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 HOXB3P14651 431 aaPredicted RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 SELPP16109 830 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CHMP24386 653 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 PTGS2P35354 604 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 RAE1P78406 368 aaKnown RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 SYPL1Q16563 259 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 LRRC26Q2I0M4 334 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 IFI44LQ53G44 452 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ATAT1Q5SQI0 421 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SYCE2Q6PIF2 218 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 USP30Q70CQ3 517 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 NPAS4Q8IUM7 802 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 TIGD4Q8IY51 512 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 FAM9CQ8IZT9 166 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SLC9A6Q92581 669 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CCDC115Q96NT0 180 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CDK5RAP1Q96SZ6 601 aaKnown RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 RPRD1BQ9NQG5 326 aaKnown RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 CNIH4Q9P003 139 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 A0A1W2PRB8 838 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 TEX46H3BTG2 121 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 EIF3FO00303 357 aaPredicted RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 GNB5O14775 395 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SCAMP2O15127 329 aaKnown RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 SCN2BO60939 215 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ZNF8P17098 575 aaPredicted RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 FUT1P19526 365 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 IDSP22304 550 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CCR2P41597 374 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SPINT3P49223 89 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ID2Q02363 134 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 KCNC4Q03721 635 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SLC35F1Q5T1Q4 408 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ATAD3CQ5T2N8 411 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 GCNT6Q5T4J0 391 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CAPN13Q6MZZ7 669 aaPredicted RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 CCDC149Q6ZUS6 474 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SLC30A8Q8IWU4 369 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 MYDGFQ969H8 173 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ZNF486Q96H40 463 aaPredicted RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 SLC6A16Q9GZN6 736 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SEMA3GQ9NS98 782 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CUEDC1Q9NWM3 386 aaPredicted RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 TAC3Q9UHF0 121 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ATP6V1HQ9UI12 483 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 PSORS1C1Q9UIG5 152 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 WBP11Q9Y2W2 641 aaKnown RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 LOC285556D6RIA3 1793 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 MANSC4A6NHS7 340 aaPredicted RBP8.26□□□□□ -1.09
USP40-203ENST00000427112 CCNB2O95067 398 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 NPPAP01160 153 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CYP17A1P05093 508 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CDK1P06493 297 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 SYPP08247 313 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 TSPAN19P0C672 248 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ELFN1P0C7U0 828 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ZDHHC11BP0C7U3 371 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 OR12D1P0DN82 309 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 MAPK1P28482 360 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 IMPA1P29218 277 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 LIM2P55344 173 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 GABARAPL2P60520 117 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 AP1S1P61966 158 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 CAMK1Q14012 370 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 MPEG1Q2M385 716 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 PROX2Q3B8N5 592 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 ZFP69Q49AA0 526 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 TCEAL5Q5H9L2 206 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 WDR45BQ5MNZ6 344 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 AGAP7PQ5VUJ5 663 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 AADATQ8N5Z0 425 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 GOLM1Q8NBJ4 401 aa8.26□□□□□ -1.09
USP40-203ENST00000427112 OR5AR1Q8NGP9 310 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms