RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TP53TG5Q9Y2B4 290 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 C17orf113A0A1B0GUU1 675 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LSM1O15116 133 aaKnown RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SFTPBP07988 381 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ITGB5P18084 799 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CCND3P30281 292 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LCN1P31025 176 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF763Q0D2J5 394 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NIPAL4Q0D2K0 466 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 TCTE1Q5JU00 501 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FAM69BQ5VUD6 431 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LIPJQ5W064 366 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 OR2T5Q6IEZ7 315 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 DCBLD1Q8N8Z6 715 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 C1orf127Q8N9H9 656 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 OR2T29Q8NH02 315 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NTAN1Q96AB6 310 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 DNAJC19Q96DA6 116 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LENG8Q96PV6 779 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 WDR55Q9H6Y2 383 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ARGFXA6NJG6 315 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LRCH4O75427 683 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SCAF4O95104 1147 aaKnown RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 THEGLP0DJG4 465 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 POLR2CP19387 275 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 EPHA4P54764 986 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 GBE1Q04446 702 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF267Q14586 743 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 OR56B2PQ8NGI1 322 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 LRRN4Q8WUT4 740 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 PYURFQ96I23 114 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 AGXT2Q9BYV1 514 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 EBF3Q9H4W6 596 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SSU72Q9NP77 194 aaKnown RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FAIMQ9NVQ4 179 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SPATA31D1Q6ZQQ2 1576 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 TMEM131LA2VDJ0 1609 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 A0A0G2JN53 185 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SLC19A2O60779 497 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FMO3P31513 532 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 GABRA3P34903 492 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CDK6Q00534 326 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF169Q14929 603 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ATAD3CQ5T2N8 411 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NDNFQ8TB73 568 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NELL2Q99435 816 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ACTRT3Q9BYD9 372 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 RGCCQ9H4X1 137 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 MCTS1Q9ULC4 181 aaKnown RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NAALAD2Q9Y3Q0 740 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FXYD6-FXYD2A0A087WZ82 144 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 C11orf98E9PRG8 122 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 DNAJB6O75190 326 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 MTPNP58546 118 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NR0B2Q15466 257 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF630Q2M218 657 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 PITRM1Q5JRX3 1037 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 MEDAGQ5VYS4 303 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 MARCH9Q86YJ5 346 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ELMOD2Q8IZ81 293 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CMTM1Q8IZ96 169 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 JOSD2Q8TAC2 188 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 NKD2Q969F2 451 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 TXNDC15Q96J42 360 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 CDCA3Q99618 268 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SULT4A1Q9BR01 284 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF559Q9BR84 538 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 FXYD6Q9H0Q3 95 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 SDCBP2Q9H190 292 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF442Q9H7R0 627 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 ACP6Q9NPH0 428 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 MKS1Q9NXB0 559 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 TAS2R1Q9NYW7 299 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 EMC3Q9P0I2 261 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 INSL5Q9Y5Q6 135 aa6.61□□□□□ -1.35
SCN1A-204ENST00000423058 TTC3P53804 2025 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LRRTM2O43300 516 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 NOBOXO60393 691 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 EDF1O60869 148 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 CD36P16671 472 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 AZGP1P25311 298 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MSX2P35548 267 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 IDH3AP50213 366 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 CCNHP51946 323 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 DBPQ10586 325 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MAB21L1Q13394 359 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PTGR1Q14914 329 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 RAB11BQ15907 218 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 TPRA1Q86W33 373 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PSD4Q8NDX1 1056 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 OR14L1PQ8NHC6 308 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 AGAP11Q8TF27 550 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LRRC58Q96CX6 371 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 FEM1AQ9BSK4 669 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PBDC1Q9BVG4 233 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 GPR174Q9BXC1 333 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 TRNAU1APQ9NX07 287 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SLC17A7Q9P2U7 560 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MGAT4BQ9UQ53 548 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 TRBC2A0A5B9 178 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms