RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 MED13Q9UHV7 2174 aa11.73□□□□□ -0.53
SKA1-203ENST00000417656 PHF11Q9UIL8 331 aa11.73□□□□□ -0.53
SKA1-203ENST00000417656 MRPS33Q9Y291 106 aaKnown RBP11.73□□□□□ -0.53
SKA1-203ENST00000417656 MMACHCQ9Y4U1 282 aa11.73□□□□□ -0.53
SKA1-203ENST00000417656 IGKV3D-11A0A0A0MRZ8 115 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 NSG1A0A0A6YYJ2 146 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 A6NL46 340 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 TGFBR3LH3BV60 316 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 PCDH17O14917 1159 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 AZIN1O14977 448 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 BIRC5O15392 142 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 PRMT3O60678 531 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 LYPLA1O75608 230 aaPredicted RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 SASH3O75995 380 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 CELA2AP08217 269 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 UROSP10746 265 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 BGNP21810 368 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 TPP2P29144 1249 aaPredicted RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 TBL3Q12788 808 aaKnown RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 SLC13A2Q13183 592 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 NSDHLQ15738 373 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 SFT2D3Q587I9 215 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 HHATQ5VTY9 493 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 KANK2Q63ZY3 851 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 MRM1Q6IN84 353 aaKnown RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 CYP20A1Q6UW02 462 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 ATG14Q6ZNE5 492 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 CPEB2Q7Z5Q1 589 aaKnown RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 C1orf52Q8N6N3 182 aaKnown RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 PLPP5Q8NEB5 264 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 OR6Y1Q8NGX8 325 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 AGR3Q8TD06 166 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 ATP6V1G3Q96LB4 118 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 PAIP2Q9BPZ3 127 aaKnown RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 WDR77Q9BQA1 342 aaPredicted RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 SEMA4CQ9C0C4 833 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 ZNF700Q9H0M5 742 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 ADNPQ9H2P0 1102 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 RIC8BQ9NVN3 520 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 LYARQ9NX58 379 aaKnown RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 ATG4BQ9Y4P1 393 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 CLDN16Q9Y5I7 305 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 PTGDR2Q9Y5Y4 395 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 SPACA6W5XKT8 324 aa11.72□□□□□ -0.53
SKA1-203ENST00000417656 TNRC6AQ8NDV7 1962 aaKnown RBP11.72□□□□□ -0.53
SKA1-203ENST00000417656 FAM208BQ5VWN6 2430 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 TCRBV16S1A1N1A0A5B0 115 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 MKRN2OSH3BPM6 223 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 CEACAM4O75871 244 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 AIFM1O95831 613 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 SERPINE1P05121 402 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 KLK1P06870 262 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 FAM58BPP0C7Q3 252 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 NR2F6P10588 404 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 NR1D1P20393 614 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 ITGA3P26006 1051 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 PPP2R1BP30154 601 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 SERPINB5P36952 375 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 HSD17B7P56937 341 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 WDR4P57081 412 aaKnown RBP11.71□□□□□ -0.53
SKA1-203ENST00000417656 OR4D2P58180 307 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 ID2Q02363 134 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 ZNF33BQ06732 778 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 Q0VFX4 171 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 AIMP2Q13155 320 aaKnown RBP11.71□□□□□ -0.53
SKA1-203ENST00000417656 IMPG1Q17R60 797 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 SH2D4BQ5SQS7 431 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 C18orf63Q68DL7 685 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 PAPD4Q6PIY7 484 aaKnown RBP11.71□□□□□ -0.53
SKA1-203ENST00000417656 NDUFAF7Q7L592 441 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 PAGE2Q7Z2X7 111 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 GPR180Q86V85 440 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 PARP9Q8IXQ6 854 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 ZNF595Q8IYB9 648 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 GALNT16Q8N428 558 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 GBP7Q8N8V2 638 aaPredicted RBP11.71□□□□□ -0.53
SKA1-203ENST00000417656 FDCSPQ8NFU4 85 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 C9orf43Q8TAL5 461 aaPredicted RBP11.71□□□□□ -0.53
SKA1-203ENST00000417656 WBP1Q96G27 269 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 ABHD17AQ96GS6 310 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 APIPQ96GX9 242 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 SH3GL2Q99962 352 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 SLC25A23Q9BV35 468 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 EML4Q9HC35 981 aaKnown RBP11.71□□□□□ -0.53
SKA1-203ENST00000417656 ATP13A2Q9NQ11 1180 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 NMRK1Q9NWW6 199 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 TEX10Q9NXF1 929 aaPredicted RBP11.71□□□□□ -0.53
SKA1-203ENST00000417656 NKIRAS1Q9NYS0 192 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 AHSPQ9NZD4 102 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 VPS29Q9UBQ0 182 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 ADAM29Q9UKF5 820 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 TP53TG5Q9Y2B4 290 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 ASB4Q9Y574 426 aa11.71□□□□□ -0.53
SKA1-203ENST00000417656 CHD6Q8TD26 2715 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 MYOCOSA0A1B0GUC4 107 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 A0A1W2PR48 441 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 ARHGAP10A1A4S6 786 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 SERTM1A2A2V5 107 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 TMEM114B3SHH9 223 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 K7EM74 188 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms