RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TPRKBQ9Y3C4 175 aa14.13□□□□□ -0.15
USP4-203ENST00000415188 PCDHGB1Q9Y5G3 927 aa14.13□□□□□ -0.15
USP4-203ENST00000415188 DNMT3AQ9Y6K1 912 aaPredicted RBP14.13□□□□□ -0.15
USP4-203ENST00000415188 ASPMQ8IZT6 3477 aa14.13□□□□□ -0.15
USP4-203ENST00000415188 A0A1W2PP55 124 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 YY2O15391 372 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 SUV39H1O43463 412 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 POP7O75817 140 aaKnown RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 C9P02748 559 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 RPN2P04844 631 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PROS1P07225 676 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 ZNF8P17098 575 aaPredicted RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 JUNDP17535 347 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 CCNA2P20248 432 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 TAP2Q03519 686 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 MEP1AQ16819 746 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 HLA-BQ31612 363 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 GTF2IRD2BQ6EKJ0 949 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 FAM71E1Q6IPT2 247 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 FAHD1Q6P587 224 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 XKR5Q6UX68 686 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 COMMD6Q7Z4G1 85 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 GTF2IRD2Q86UP8 949 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PDZD3Q86UT5 571 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 DCUN1D3Q8IWE4 304 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 OXR1Q8N573 874 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 GPR156Q8NFN8 814 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 OR52N2Q8NGI0 321 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 MUL1Q969V5 352 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 RAD51AP1Q96B01 352 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PPCDCQ96CD2 204 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 COX14Q96I36 57 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 FAM129BQ96TA1 746 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PITX2Q99697 317 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 ORAI3Q9BRQ5 295 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 LIN28AQ9H9Z2 209 aaKnown RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 PELI2Q9HAT8 420 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PRM3Q9NNZ6 103 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 CCNB1IP1Q9NPC3 277 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 KLK13Q9UKR3 277 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 COQ6Q9Y2Z9 468 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 SAMHD1Q9Y3Z3 626 aaKnown RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 SPEGQ15772 3267 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 KNL1Q8NG31 2342 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 ZFHX4Q86UP3 3567 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 MYO1GB0I1T2 1018 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 TBX19O60806 448 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 SEMA3DO95025 777 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 ATE1O95260 518 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 CER1O95813 267 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 IGHV4-34P06331 123 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 FURINP09958 794 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 ERGP11308 486 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PRKACGP22612 351 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 POLR2IP36954 125 aaKnown RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 DAPP51397 102 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 AFF3P51826 1226 aaKnown RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 CDK5R2Q13319 367 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 GAB1Q13480 694 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 TRIP6Q15654 476 aaKnown RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 CYP2A13Q16696 494 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PRAMEF14Q5SWL7 426 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 GCNT6Q5T4J0 391 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PRAMEF13Q5VWM6 474 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 FAM46CQ5VWP2 391 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 KIAA0895LQ68EN5 471 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 USP30Q70CQ3 517 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 CCDC80Q76M96 950 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 CYP4Z1Q86W10 505 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 C16orf78Q8WTQ4 265 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 THAP11Q96EK4 314 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 NODALQ96S42 347 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 ZNF347Q96SE7 839 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 DOHHQ9BU89 302 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PITHD1Q9GZP4 211 aaPredicted RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 PCBD2Q9H0N5 130 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 OR52A5Q9H2C5 316 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 TMEM38AQ9H6F2 299 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 AHSPQ9NZD4 102 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PDP1Q9P0J1 537 aaPredicted RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 SH3BP4Q9P0V3 963 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 SPATA7Q9P0W8 599 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 KIF17Q9P2E2 1029 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 FAF1Q9UNN5 650 aaPredicted RBP14.12□□□□□ -0.15
USP4-203ENST00000415188 ERVK-11Q9UQG0 969 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 NCKAP1Q9Y2A7 1128 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 PCDHGB3Q9Y5G1 929 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 SNX11Q9Y5W9 270 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 U3KQV3 271 aa14.12□□□□□ -0.15
USP4-203ENST00000415188 AKAP13Q12802 2813 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 ANKRD33BA6NCL7 494 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 A8MVJ9 347 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 E9PQ18 207 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 ADAMDEC1O15204 470 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 B4GAT1O43505 415 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 MMP20O60882 483 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 KRT75O95678 551 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 ANGPTL1O95841 491 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 IFNA14P01570 189 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 CXCR2P25025 360 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms