RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 RPS26P62854 115 aaKnown RBP15.64■□□□□ 0.09
SDC4-201ENST00000372733 ZNF91Q05481 1191 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 RUNX1T1Q06455 604 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 C2orf80Q0P641 193 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 PUM1Q14671 1186 aaKnown RBP eCLIP15.64■□□□□ 0.09
SDC4-201ENST00000372733 SEC23BQ15437 767 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 ZNF630Q2M218 657 aaPredicted RBP15.64■□□□□ 0.09
SDC4-201ENST00000372733 SNAP47Q5SQN1 464 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 LIPKQ5VXJ0 399 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 MED27Q6P2C8 311 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 HSD11B1LQ7Z5J1 315 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.64■□□□□ 0.09
SDC4-201ENST00000372733 KLHL6Q8WZ60 621 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 TMEM175Q9BSA9 504 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 RERGLQ9H628 205 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 RANGRFQ9HD47 186 aaPredicted RBP15.64■□□□□ 0.09
SDC4-201ENST00000372733 STUB1Q9UNE7 303 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 PPIL1Q9Y3C6 166 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 CMAHPQ9Y471 501 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 BACE2Q9Y5Z0 518 aa15.64■□□□□ 0.09
SDC4-201ENST00000372733 PRRG1O14668 218 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 GPR37L1O60883 481 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 TGFB1P01137 390 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CLEC2LP0C7M8 214 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 ENDOUP21128 410 aaKnown RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 PSMA1P25786 263 aaKnown RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 PBLDP30039 288 aaPredicted RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 CTSCP53634 463 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CYP4F8P98187 520 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CAP1Q01518 475 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 LARS2Q15031 903 aaKnown RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 CLPPQ16740 277 aaPredicted RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 FAM131AQ6UXB0 335 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 SLCO4C1Q6ZQN7 724 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 VN1R5Q7Z5H4 357 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CELF5Q8N6W0 485 aaKnown RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 CXorf40BQ96DE9 158 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 RNF170Q96K19 258 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 POLR2J2Q9GZM3 115 aaKnown RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 ABCB9Q9NP78 766 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 FZD3Q9NPG1 666 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CFAP97Q9P2B7 532 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 REV1Q9UBZ9 1251 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 NUFIP1Q9UHK0 495 aaKnown RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 SNX11Q9Y5W9 270 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CCDC88CQ9P219 2028 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 HYKKA2RU49 373 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 PLD2O14939 933 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 TPST2O60704 377 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CDRT1O95170 752 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 IFNA14P01570 189 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 CATP04040 527 aaKnown RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 ALDH9A1P49189 494 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 TAS2R50P59544 299 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 MEF2AQ02078 507 aaPredicted RBP15.63■□□□□ 0.09
SDC4-201ENST00000372733 SLBPQ14493 270 aaKnown RBP eCLIP15.63■□□□□ 0.09
SDC4-201ENST00000372733 Q6ZVL8 140 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 RNF180Q86T96 592 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 OR56A3Q8NH54 315 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 C16orf78Q8WTQ4 265 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 TMEM80Q96HE8 168 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 ZFYVE19Q96K21 471 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 WDFY2Q96P53 400 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 UCK2Q9BZX2 261 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 MIXL1Q9H2W2 232 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 NDUFB11Q9NX14 153 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 THSD7BQ9C0I4 1608 aa15.63■□□□□ 0.09
SDC4-201ENST00000372733 PCM1Q15154 2024 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 HMX3A6NHT5 357 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 H3BN98 237 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 ABLIM3O94929 683 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 CSF2P04141 144 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 ETV3P41162 512 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 LRRC74AQ0VAA2 488 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 PDE7AQ13946 482 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 Q5BKY6 102 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 Q6ZVU0 165 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 GPR65Q8IYL9 337 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 CMTM8Q8IZV2 173 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 UBE2J2Q8N2K1 259 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 IQCF1Q8N6M8 205 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 SLC7A6Q92536 515 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 TMEM159Q96B96 161 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 C11orf54Q9H0W9 315 aaPredicted RBP15.62■□□□□ 0.09
SDC4-201ENST00000372733 KCND3Q9UK17 655 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 MAU2Q9Y6X3 613 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 A0A0B4J293 547 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 ARRDC5A6NEK1 342 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 CENPBD1B2RD01 187 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 NPC1O15118 1278 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 SEMA7AO75326 666 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 KLHL18O94889 574 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 CKMP06732 381 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 OSMP13725 252 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 SNRPGP62308 76 aaKnown RBP15.62■□□□□ 0.09
SDC4-201ENST00000372733 HOXC5Q00444 222 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 HNRNPA0Q13151 305 aaKnown RBP15.62■□□□□ 0.09
SDC4-201ENST00000372733 TRIM69Q86WT6 500 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 OR9Q1Q8NGQ5 310 aa15.62■□□□□ 0.09
SDC4-201ENST00000372733 MYLIPQ8WY64 445 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms