RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 LAMP5Q9UJQ1 280 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ACSL6Q9UKU0 697 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CABIN1Q9Y6J0 2220 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CD163L1Q9NR16 1453 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 TOXO94900 526 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ELK4P28324 431 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 RPIAP49247 311 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 NKX2-5P52952 324 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 RBMS2Q15434 407 aaKnown RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 Q3ZCU0 254 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 LARP4Q71RC2 724 aaKnown RBP eCLIP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 OR2A12Q8NGT7 310 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 B4GALT4O60513 344 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 TMEM127O75204 238 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 S100A7P31151 101 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SRPXP78539 464 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 HTD2P86397 168 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CD276Q5ZPR3 534 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 AADACL2Q6P093 401 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 KCTD18Q6PI47 426 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 NXPE1Q8N323 547 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 AKT1S1Q96B36 256 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CNTNAP3Q9BZ76 1288 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 FZD4Q9ULV1 537 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 TMEM221A6NGB7 291 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 LRCH4O75427 683 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CLDN11O75508 207 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 HOXB9P17482 250 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 PSEN2P49810 448 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CNIH2Q6PI25 160 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ZER1Q7Z7L7 766 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SCARB1Q8WTV0 552 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SLCO5A1Q9H2Y9 848 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 COQ4Q9Y3A0 265 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 LRRC72A6NJI9 287 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 M0QZK8 103 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 GGCTO75223 188 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 RAD51DO75771 328 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 JUPP14923 745 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF132P52740 706 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 NUDT13Q86X67 352 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SLC35B2Q8TB61 432 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 TMEM68Q96MH6 324 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 BARD1Q99728 777 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 DBNDD1Q9H9R9 158 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 FBXO8Q9NRD0 319 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 GNG13Q9P2W3 67 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 FKBPLQ9UIM3 349 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF878C9JN71 531 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 AKAIN1P0CW23 69 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 RIN1Q13671 783 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 PCLAFQ15004 111 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 CHRNA6Q15825 494 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 CTXN3Q4LDR2 81 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 JAGN1Q8N5M9 183 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF454Q8N9F8 522 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 GSX2Q9BZM3 304 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 INTS6Q9UL03 887 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 RGS11O94810 467 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SPDEFO95238 335 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ASPAP45381 313 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 HSD11B2P80365 405 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 DPYSL2Q16555 572 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF101Q8IZC7 436 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF366Q8N895 744 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 PXT1Q8NFP0 134 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 PARK7Q99497 189 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SLC6A17Q9H1V8 727 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 HIF3AQ9Y2N7 669 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 KPTNQ9Y664 436 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 OR6C74A6NCV1 312 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 C1QBP02746 253 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 RAB40ALP0C0E4 278 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF286BP0CG31 522 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ICAM3P32942 547 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 OR12D2P58182 307 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZFAND1Q8TCF1 268 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 HASPINQ8TF76 798 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 RAB40AQ8WXH6 277 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 PNPLA2Q96AD5 504 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 NKX6-2Q9C056 277 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 AIG1Q9NVV5 245 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 TMPRSS11EQ9UL52 423 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SLC6A5Q9Y345 797 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 TLX2O43763 284 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 CSTBP04080 98 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 WNT4P56705 351 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 TSTD2Q5T7W7 516 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 C1orf87Q8N0U7 546 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SYNE4Q8N205 404 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 KCNH6Q9H252 994 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 RAB9BQ9NP90 201 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 VPS29Q9UBQ0 182 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 PRSS51A0A1B0GVH4 220 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 TRBC2A0A5B9 178 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 CKMT1AP12532 417 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SPI1P17947 270 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 FAM124AQ86V42 546 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 IQCHQ86VS3 1027 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 B3GNT7Q8NFL0 401 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms