RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NCF4Q15080 339 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 KLHL22Q53GT1 634 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 TMEM201Q5SNT2 666 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ATXN7L2Q5T6C5 722 aaPredicted RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 GPRC6AQ5T6X5 926 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MEDAGQ5VYS4 303 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 GPR139Q6DWJ6 353 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 FAM151BQ6UXP7 276 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PLEKHM3Q6ZWE6 761 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MON1AQ86VX9 555 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 METTL23Q86XA0 190 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 GHDCQ8N2G8 530 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ZBTB2Q8N680 514 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 C11orf65Q8NCR3 313 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PROKR2Q8NFJ6 384 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 OR11H7Q8NGC8 314 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MFRPQ9BY79 579 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MRPL9Q9BYD2 267 aaKnown RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 FAM105AQ9NUU6 356 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SLCO1C1Q9NYB5 712 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 REV1Q9UBZ9 1251 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 STOML2Q9UJZ1 356 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MGAT4AQ9UM21 535 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SCML2Q9UQR0 700 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PCDHGB7Q9Y5F8 929 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PLXNA3P51805 1871 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 DNAH12Q6ZR08 3092 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 HEPACAM2A8MVW5 462 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 NPIPB8E9PQR5 432 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 TSPAN4O14817 238 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 GADD45GO95257 159 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 CPEP16870 476 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 DGKAP23743 735 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 IRS1P35568 1242 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 OPRD1P41143 372 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ETV5P41161 510 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ETV1P50549 477 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 HMGA2P52926 109 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 RIN1Q13671 783 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 GALEQ14376 348 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 GGTA1PQ4G0N0 100 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MFSD14CQ5VZR4 134 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SPRYD7Q5W111 196 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 TMEM107Q6UX40 140 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 CDH24Q86UP0 819 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 DENND1CQ8IV53 801 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ADGRG2Q8IZP9 1017 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 C1orf52Q8N6N3 182 aaKnown RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 DNAJC5GQ8N7S2 189 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS39-202ENST00000348544 CSGALNACT1Q8TDX6 532 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ZNF431Q8TF32 576 aaPredicted RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 TM9SF4Q92544 642 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 METTL2AQ96IZ6 378 aaKnown RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 KCTD7Q96MP8 289 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PIP5K1AQ99755 562 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 TM9SF2Q99805 663 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SPON2Q9BUD6 331 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MED18Q9BUE0 208 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 DUSP26Q9BV47 211 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 TSSK6Q9BXA6 273 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SLC32A1Q9H598 525 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SLC28A3Q9HAS3 691 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 LATS2Q9NRM7 1088 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ZNF224Q9NZL3 707 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 FLRT1Q9NZU1 646 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SF3B6Q9Y3B4 125 aaKnown RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 TRBV4-1A0A0J9YWV2 114 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 GABRR3A8MPY1 467 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 M0QZQ0 153 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 FFAR1O14842 300 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ZNF623O75123 536 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 NCR1O76036 304 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 MPC2O95563 127 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 POMCP01189 267 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 IGLV3-27P01718 113 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 BPIP17213 487 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 HK1P19367 917 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 TACR2P21452 398 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 LHCGRP22888 699 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 HOXD10P28358 340 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SLC6A4P31645 630 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 GRK4P32298 578 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 RPL9P32969 192 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 NNMTP40261 264 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 EVX1P49640 407 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 CTBP2P56545 445 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PPP3R1P63098 170 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 EXOSC2Q13868 293 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 KCNC3Q14003 757 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 IL18Q14116 193 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SF3A2Q15428 464 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 TEAD4Q15561 434 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ATAT1Q5SQI0 421 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 FRG2Q64ET8 278 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 TYW3Q6IPR3 259 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 METTL2BQ6P1Q9 378 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 USP30Q70CQ3 517 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PRSS42Q7Z5A4 293 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 KIF18BQ86Y91 864 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms