RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 SMAP2Q8WU79 429 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-202ENST00000347401 CACNG6Q9BXT2 260 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 APMAPQ9HDC9 416 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 DHDHQ9UQ10 334 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 PEAK1Q9H792 1746 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 MOXD2PA6NHM9 499 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 HHLA1C9JL84 531 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 SLC1A7O00341 560 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 TYROBPO43914 113 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 NTRK2Q16620 822 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 KCNIP4Q6PIL6 250 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 OR10G6Q8NH81 332 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 RIPOR3Q96MK2 946 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 FAM118AQ9NWS6 357 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 SERINC3Q13530 473 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 C2CD4AQ8NCU7 369 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-202ENST00000347401 KCNJ9Q92806 393 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 SRMSQ9H3Y6 488 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 DPEP2Q9H4A9 486 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 ACP6Q9NPH0 428 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 LRFN1Q9P244 771 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 ATG4BQ9Y4P1 393 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 DOCK10Q96BY6 2186 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 FAM170BA6NMN3 283 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 EEF1E1O43324 174 aaKnown RBP12.83□□□□□ -0.36
COL6A3-202ENST00000347401 KIAA0513O60268 411 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 CDK1P06493 297 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 SNHG28P0DPA3 235 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 AHCYP23526 432 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 KCTD9Q7L273 389 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 ESX1Q8N693 406 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 TMEM203Q969S6 136 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 PKP4Q99569 1192 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 OR2AG1Q9H205 316 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 FBXW2Q9UKT8 454 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 A0A1W2PQH9 124 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 A8MX80 341 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 SLC26A5P58743 744 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 SELPLGQ14242 412 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 SSX2Q16385 188 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 AUTS2Q8WXX7 1259 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 NELL2Q99435 816 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 CNN2Q99439 309 aaKnown RBP12.83□□□□□ -0.36
COL6A3-202ENST00000347401 KCNJ16Q9NPI9 418 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 KDM3BQ7LBC6 1761 aa12.83□□□□□ -0.36
COL6A3-202ENST00000347401 OIP5O43482 229 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SNAP29O95721 258 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 TFP02787 698 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 MMP12P39900 470 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 POLR2HP52434 150 aaKnown RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 NANOGP8Q6NSW7 305 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 NIPAL3Q6P499 406 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 NSMAFQ92636 917 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 TMEM41AQ96HV5 264 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 NANOGQ9H9S0 305 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 TVP23AA6NH52 213 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 NUDT19A8MXV4 375 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 ZNF616Q08AN1 781 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 FAM83HQ6ZRV2 1179 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CACNA1DQ01668 2161 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 RBMS1P29558 406 aaKnown RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 HOXA10P31260 410 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 MC1RQ01726 317 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 RELAQ04206 551 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CATSPERGQ6ZRH7 1159 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 OTOP3Q7RTS5 596 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 KDM1BQ8NB78 822 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SLC35F5Q8WV83 523 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 RBP7Q96R05 134 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 UTS2RQ9UKP6 389 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 PLATP00750 562 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 RNH1P13489 461 aaKnown RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 PFKLP17858 780 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 RAB8AP61006 207 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 OVCA2Q8WZ82 227 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 HOXB13Q92826 284 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 FBXO7Q9Y3I1 522 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 NACAE9PAV3 2078 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CRTAPO75718 401 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CELF2O95319 508 aaKnown RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CAMLGP49069 296 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SELENOVP59797 346 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 TRAPPC12Q8WVT3 735 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 OR2M2Q96R28 347 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 LUZP4Q9P127 313 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 BRWD1Q9NSI6 2320 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 A0A0D9SG52 128 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 C2orf92A0A1B0GVN3 265 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 LGR5O75473 907 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 ARL2P36404 184 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 IRF5Q13568 498 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 IRF4Q15306 451 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 TOR1AIP1Q5JTV8 583 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 LIPKQ5VXJ0 399 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 RFPL4BQ6ZWI9 263 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SLC24A5Q71RS6 500 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SYT14Q8NB59 555 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 GLIS3Q8NEA6 775 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms