RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PLCH1Q4KWH8 1693 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 A0A087WUU8 490 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 LGALS8O00214 317 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 CDH1P12830 882 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 PTPN4P29074 926 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 NOMO3P69849 1222 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 LRIG3Q6UXM1 1119 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 NDUFAF7Q7L592 441 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 RTN4RL1Q86UN2 441 aaPredicted RBP8.02□□□□□ -1.12
HMGB1-203ENST00000341423 TRMT2AQ8IZ69 625 aaKnown RBP8.02□□□□□ -1.12
HMGB1-203ENST00000341423 OR9A2Q8NGT5 310 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 SCRN2Q96FV2 425 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 C16orf58Q96GQ5 468 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 CLPTM1LQ96KA5 538 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 OR5B2Q96R09 309 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 CALHM2Q9HA72 323 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 SLC7A11Q9UPY5 501 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 PCDHGB1Q9Y5G3 927 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 FAM208AQ9UK61 1670 aaKnown RBP8.02□□□□□ -1.12
HMGB1-203ENST00000341423 RTTNQ86VV8 2226 aa8.02□□□□□ -1.12
HMGB1-203ENST00000341423 IGKV6-21A0A0C4DH24 114 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 H0YJX3 145 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 TOR1AO14656 332 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ITGB2P05107 769 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 MNDAP41218 407 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 MAGEA4P43358 317 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SPINT3P49223 89 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 MECP2P51608 486 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 CBFBQ13951 182 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 XKRXQ6PP77 449 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SETD6Q8TBK2 473 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 RASSF5Q8WWW0 418 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 C6orf62Q9GZU0 229 aaPredicted RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 G3V3Y1 287 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 MYO1CO00159 1063 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 EBAG9O00559 213 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SNPHO15079 494 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 EBLN1P0CF75 366 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 TALDO1P37837 337 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 NFE2L1Q14494 772 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SLC36A3Q495N2 470 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 C6orf141Q5SZD1 244 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SUSD1Q6UWL2 747 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 TMEM108Q6UXF1 575 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 NAPRTQ6XQN6 538 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 LIPIQ6XZB0 460 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 TMEM184AQ6ZMB5 413 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 EIF3MQ7L2H7 374 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 PRELID2Q8N945 189 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 CCL19Q99731 98 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 RPF2Q9H7B2 306 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 THUMPD1Q9NXG2 353 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 PACSIN3Q9UKS6 424 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ARL5AQ9Y689 179 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 K7ERQ8 282 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 IL1AP01583 271 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 CD1EP15812 388 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ITGA2P17301 1181 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ATF6P18850 670 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 CD247P20963 164 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SLC6A6P31641 620 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 GGTLC2Q14390 218 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SLC5A9Q2M3M2 681 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 NDUFAF5Q5TEU4 345 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 XYLT1Q86Y38 959 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF619Q8N2I2 560 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 H1FXQ92522 213 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 HPS1Q92902 700 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 NKX3-1Q99801 234 aaPredicted RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 DHRS7Q9Y394 339 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 CABIN1Q9Y6J0 2220 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 DOT1LQ8TEK3 1739 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 FUOMA2VDF0 154 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 RDH16O75452 317 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 RSL1D1O76021 490 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 GOT2P00505 430 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 TGFB1P01137 390 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 CD9P21926 228 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ST13P50502 369 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 NNATQ16517 81 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ANKRD26P1Q6NSI1 321 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF765Q7L2R6 523 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 PNLDC1Q8NA58 520 aaKnown RBP8.02□□□□□ -1.13
HMGB1-203ENST00000341423 FBXO36Q8NEA4 188 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 OR4D9Q8NGE8 314 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 PYCR2Q96C36 320 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF382Q96SR6 550 aa8.02□□□□□ -1.13
HMGB1-203ENST00000341423 SPTY2D1-AS1A0A0U1RR47 76 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 KRBA1A5PL33 1030 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 FAM20BO75063 409 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 STX11O75558 287 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 CSTAP01040 98 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 DCTP40126 519 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 CSRP3P50461 194 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 GPR85P60893 370 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PPP3R1P63098 170 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 MAMLD1Q13495 774 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 NR1I3Q14994 352 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 TATDN3Q17R31 274 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF550Q7Z398 422 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms