RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CERS1P27544 350 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 SIM1P81133 766 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 GPR18Q14330 331 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 C18orf21Q32NC0 220 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 C3orf38Q5JPI3 329 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 RNF168Q8IYW5 571 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 MTERF3Q96E29 417 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 INTS6Q9UL03 887 aaKnown RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 E2F3O00716 465 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 RDH16O75452 317 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 PGCP20142 388 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 ANGPT1Q15389 498 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 SNAPC1Q16533 368 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 MAPK14Q16539 360 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 MSANTD1Q6ZTZ1 278 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 ASB12Q8WXK4 309 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 OR1E3Q8WZA6 343 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 FKBP10Q96AY3 582 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 COQ10AQ96MF6 247 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 STARD5Q9NSY2 213 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 GNB5O14775 395 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 MAGEB3O15480 346 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 CREB1P16220 341 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 TCN2P20062 427 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 PDX1P52945 283 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 WDR4P57081 412 aaKnown RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 TAS2R38P59533 333 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 TRAP1Q12931 704 aaKnown RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 SLC5A12Q1EHB4 618 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 BPHLQ86WA6 291 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 KBTBD2Q8IY47 623 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 UBE2J2Q8N2K1 259 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 TOR1AIP2Q8NFQ8 470 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 RPP25Q9BUL9 199 aaKnown RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 LRMDAQ9H2I8 198 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 LRRN3Q9H3W5 708 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 WASH6PQ9NQA3 447 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 NLGN3Q9NZ94 848 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 SARDHQ9UL12 918 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 C17orf105B2RV13 164 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 SCO2O43819 266 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 APOA1P02647 267 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ACPPP15309 386 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 PPP2CBP62714 309 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 PPP2CAP67775 309 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 SPEM2Q0P670 501 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 C6orf136Q5SQH8 315 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 SLC2A7Q6PXP3 512 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 C6orf15Q6UXA7 325 aaPredicted RBP9.69□□□□□ -0.86
USP54-201ENST00000339859 ANKRD27Q96NW4 1050 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 IFT27Q9BW83 186 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 A0A096LPI6 279 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 A6NL46 340 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 IVDP26440 423 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ACVR2AP27037 513 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 DGKQP52824 942 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 EEF1A2Q05639 463 aaKnown RBP9.69□□□□□ -0.86
USP54-201ENST00000339859 TMEM44Q2T9K0 475 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 TMEM154Q6P9G4 183 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 TSPEARQ8WU66 669 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 RORBQ92753 470 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 DIO2Q92813 273 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 CLPTM1LQ96KA5 538 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ZFRQ96KR1 1074 aaKnown RBP9.69□□□□□ -0.86
USP54-201ENST00000339859 SMIM14Q96QK8 99 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 MKRN2Q9H000 416 aaKnown RBP9.69□□□□□ -0.86
USP54-201ENST00000339859 FBXO4Q9UKT5 387 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.69□□□□□ -0.86
USP54-201ENST00000339859 DOCK5Q9H7D0 1870 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.69□□□□□ -0.86
USP54-201ENST00000339859 C2orf92A0A1B0GVN3 265 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 A0A1W2PP18 115 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 STX11O75558 287 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 CCDC159P0C7I6 412 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 CISD3P0C7P0 127 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 IGFBP5P24593 272 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 XCR1P46094 333 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 GALNT1Q10472 559 aaPredicted RBP9.69□□□□□ -0.86
USP54-201ENST00000339859 ST3GAL3Q11203 375 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ZSWIM7Q19AV6 140 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ZDHHC21Q8IVQ6 265 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 LSMEM2Q8N112 164 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 RFKQ969G6 155 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 CHRDQ9H2X0 955 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 TIMMDC1Q9NPL8 285 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ERGIC3Q9Y282 383 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 ARHGAP33O14559 1287 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 TALDO1P37837 337 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 CTBP2P56545 445 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 SPANXN4Q5MJ08 99 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 NEIL2Q969S2 332 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 EBF4Q9BQW3 602 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 PDP2Q9P2J9 529 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 MYRFQ9Y2G1 1151 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 GSTK1Q9Y2Q3 226 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 CDC40O60508 579 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP54-201ENST00000339859 SEMA3DO95025 777 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 GSTM3P21266 225 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 FADDQ13158 208 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 HLA-BQ31612 363 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms