RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FRG2BQ96QU4 278 aa14.82□□□□□ -0.04
CLN3-201ENST00000333496 NPAS2Q99743 824 aa14.82□□□□□ -0.04
CLN3-201ENST00000333496 C12orf65Q9H3J6 166 aaKnown RBP14.82□□□□□ -0.04
CLN3-201ENST00000333496 MMP25Q9NPA2 562 aa14.82□□□□□ -0.04
CLN3-201ENST00000333496 PPT2Q9UMR5 302 aa14.82□□□□□ -0.04
CLN3-201ENST00000333496 A8MUA0 341 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 G3V2L1 256 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 OTCP00480 354 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 PROCP04070 461 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 IMPDH1P20839 514 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 PPP2R1BP30154 601 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 BSGP35613 385 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 TSFMP43897 325 aaKnown RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 ARFIP1P53367 373 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 PRKAA2P54646 552 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 AP2B1P63010 937 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 PHEXP78562 749 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 CUL3Q13618 768 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 INPP5JQ15735 1006 aaPredicted RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 DNAJB14Q8TBM8 379 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 ELP5Q8TE02 316 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 L3HYPDHQ96EM0 354 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 FARSBQ9NSD9 589 aaKnown RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 PLA2G3Q9NZ20 509 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 FBXW2Q9UKT8 454 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 TLDC2A0PJX2 215 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 SAGE2PA6NJ88 616 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 A8MUI8 341 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 CLDN4O14493 209 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 EEDO75530 441 aaKnown RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 OR4F21O95013 312 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 F10P00742 488 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 KRT4P19013 534 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 CRHR1P34998 444 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 RAP1GDS1P52306 607 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 SLC18A2Q05940 514 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 SLC13A2Q13183 592 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 SLAMF1Q13291 335 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 FCRLBQ6BAA4 426 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 CLNKQ7Z7G1 428 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 SLC22A9Q8IVM8 553 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 ZCCHC7Q8N3Z6 543 aaKnown RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 KIF2BQ8N4N8 673 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 ARMC2Q8NEN0 867 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 HAS2Q92819 552 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 MAGEB10Q96LZ2 347 aaPredicted RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 ILKAPQ9H0C8 392 aaPredicted RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 KCNK13Q9HB14 408 aa14.81□□□□□ -0.04
CLN3-201ENST00000333496 MRPS33Q9Y291 106 aaKnown RBP14.81□□□□□ -0.04
CLN3-201ENST00000333496 UBR5O95071 2799 aaPredicted RBP14.8□□□□□ -0.04
CLN3-201ENST00000333496 CROCCQ5TZA2 2017 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 MAN1A2O60476 641 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 PLIN3O60664 434 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 CTNSO60931 367 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 LDB3O75112 727 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 WDPCPO95876 746 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 CCT5P48643 541 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 ZNF844Q08AG5 666 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 IFFO1Q0D2I5 559 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 CEP85LQ5SZL2 805 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 MRM1Q6IN84 353 aaKnown RBP14.8□□□□□ -0.04
CLN3-201ENST00000333496 ZYG11AQ6WRX3 759 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 CRLF3Q8IUI8 442 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 C4orf33Q8N1A6 199 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 APCDD1LQ8NCL9 501 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 SNRNP40Q96DI7 357 aaKnown RBP14.8□□□□□ -0.04
CLN3-201ENST00000333496 C19orf60Q96EN9 201 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 CNDP1Q96KN2 507 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 CENPKQ9BS16 269 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 DDX31Q9H8H2 851 aaKnown RBP14.8□□□□□ -0.04
CLN3-201ENST00000333496 STMN3Q9NZ72 180 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 TRPS1Q9UHF7 1281 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 GRID1Q9ULK0 1009 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 ATG4BQ9Y4P1 393 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 PCDHGA10Q9Y5H3 936 aa14.8□□□□□ -0.04
CLN3-201ENST00000333496 COL12A1Q99715 3063 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 A0A0A6YYD5 115 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 MYOCOSA0A1B0GUC4 107 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 TMPRSS11DO60235 418 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 PDYNP01213 254 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 CPN2P22792 545 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 ST13P50502 369 aaKnown RBP14.79□□□□□ -0.04
CLN3-201ENST00000333496 ARG2P78540 354 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 ZNF33BQ06732 778 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 IFT88Q13099 833 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 RCN2Q14257 317 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 ABHD17BQ5VST6 288 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 C18orf63Q68DL7 685 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 TTC19Q6DKK2 380 aaPredicted RBP14.79□□□□□ -0.04
CLN3-201ENST00000333496 RIBC1Q8N443 379 aaPredicted RBP14.79□□□□□ -0.04
CLN3-201ENST00000333496 CISD2Q8N5K1 135 aaKnown RBP14.79□□□□□ -0.04
CLN3-201ENST00000333496 ANKRD9Q96BM1 317 aaPredicted RBP14.79□□□□□ -0.04
CLN3-201ENST00000333496 ZNF382Q96SR6 550 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 SERPINI1Q99574 410 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 RNF32Q9H0A6 362 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 GSTO2Q9H4Y5 243 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 PNO1Q9NRX1 252 aaKnown RBP14.79□□□□□ -0.04
CLN3-201ENST00000333496 PPIEQ9UNP9 301 aaKnown RBP14.79□□□□□ -0.04
CLN3-201ENST00000333496 NTNG1Q9Y2I2 539 aa14.79□□□□□ -0.04
CLN3-201ENST00000333496 ASB4Q9Y574 426 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms