RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TCEANCQ8N8B7 351 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 DNAJA4Q8WW22 397 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 RIT1Q92963 219 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM193BQ96PV7 902 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 GPR63Q9BZJ6 419 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ATG10Q9H0Y0 220 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 CHST8Q9H2A9 424 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 SLC25A19Q9HC21 320 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 MARCH2Q9P0N8 246 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 FNIP2Q9P278 1114 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF222Q9UK12 451 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ELF5Q9UKW6 265 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 SLC22A14Q9Y267 594 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 TRAV6A0A075B6T7 132 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 GABRR3A8MPY1 467 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 RFPL3O75679 317 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 NNMTP40261 264 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 ETV5P41161 510 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 RPIAP49247 311 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 RGS4P49798 205 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 ETV1P50549 477 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 CLDN20P56880 219 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 RGS1Q08116 209 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 MTAPQ13126 283 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 TAF12Q16514 161 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 CRTC2Q53ET0 693 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF628Q5EBL2 1059 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 MON1AQ86VX9 555 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 OR5AK3PQ8NH89 298 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 KLHL6Q8WZ60 621 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 SENP5Q96HI0 755 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 DIABLOQ9NR28 239 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 SH3BP4Q9P0V3 963 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 KCNE2Q9Y6J6 123 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 PDE4DIPQ5VU43 2346 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 A0A0A6YYJ9 748 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 MBLAC1A4D2B0 266 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 LINC00862A6NCI5 91 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 H3BN98 237 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 TLR4O00206 839 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 KPNA5O15131 536 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 GADD45GO95257 159 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 PRAMEF1O95521 474 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 GBAP04062 536 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 SLC6A4P31645 630 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF91Q05481 1191 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 RBBP4Q09028 425 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 HKDC1Q2TB90 917 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 IFI44LQ53G44 452 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 ARMC12Q5T9G4 340 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 BCL2L15Q5TBC7 163 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 KIAA1841Q6NSI8 718 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 NANOGP1Q8N7R0 232 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 LINC00469Q8N7U9 141 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 GATAD2BQ8WXI9 593 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 TM9SF4Q92544 642 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 POP5Q969H6 163 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 CMTM7Q96FZ5 175 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 TOE1Q96GM8 510 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 HYLS1Q96M11 299 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 HHIPQ96QV1 700 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 TSSK6Q9BXA6 273 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 TMEM245Q9H330 911 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 ASB8Q9H765 288 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 PPP1R3EQ9H7J1 279 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 ST3GAL5Q9UNP4 418 aa12.85□□□□□ -0.35
CCDC88C-201ENST00000331194 TRBV4-1A0A0J9YWV2 114 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 DRGXA6NNA5 263 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 LANCL1O43813 399 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 TRBC1P01850 177 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 PRKAR1AP10644 381 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 PRPS1L1P21108 318 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CD79BP40259 229 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 B2MP61769 119 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 RPA4Q13156 261 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 DUSP28Q4G0W2 176 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CEACAM20Q6UY09 585 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 SHFQ7M4L6 423 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 ZBTB44Q8NCP5 570 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 AKAP1Q92667 903 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 TINF2Q9BSI4 451 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 MARVELD1Q9BSK0 173 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 DUSP26Q9BV47 211 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 SLC29A3Q9BZD2 475 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CCSER2Q9H7U1 834 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 ANKRA2Q9H9E1 313 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 PAK6Q9NQU5 681 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 C5orf42Q9H799 3197 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 COL4A4P53420 1690 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 PAHP00439 452 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CFDP00746 253 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CXCL3P19876 107 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 DGKAP23743 735 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 PTPN5P54829 565 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 RAB8AP61006 207 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 HTRA3P83110 453 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 BTN1A1Q13410 526 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 AANATQ16613 207 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 ZBTB2Q8N680 514 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms