RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SNX8Q9Y5X2 465 aa17.46■□□□□ 0.39
USP39-201ENST00000323701 GMEB1Q9Y692 573 aa17.46■□□□□ 0.39
USP39-201ENST00000323701 TMEM131Q92545 1883 aa17.46■□□□□ 0.38
USP39-201ENST00000323701 PDPK1O15530 556 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 HNRNPRO43390 633 aaKnown RBP17.45■□□□□ 0.38
USP39-201ENST00000323701 SCELO95171 688 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 MYF5P13349 255 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 IL1RNP18510 177 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 FRKP42685 505 aaPredicted RBP17.45■□□□□ 0.38
USP39-201ENST00000323701 STXBP1P61764 594 aaKnown RBP17.45■□□□□ 0.38
USP39-201ENST00000323701 HSPB3Q12988 150 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 DEFB134Q4QY38 66 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 CPZQ66K79 652 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 MAMSTRQ6ZN01 415 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 RNF130Q86XS8 419 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 TMEM126BQ8IUX1 230 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 ZCCHC7Q8N3Z6 543 aaKnown RBP17.45■□□□□ 0.38
USP39-201ENST00000323701 SLC25A45Q8N413 288 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 KLHL6Q8WZ60 621 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 SIRT3Q9NTG7 399 aaPredicted RBP17.45■□□□□ 0.38
USP39-201ENST00000323701 PCDHGB4Q9UN71 923 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 MAP4K5Q9Y4K4 846 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 A6NHS1 94 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 GCM2O75603 506 aaPredicted RBP17.45■□□□□ 0.38
USP39-201ENST00000323701 SLC35G6P0C7Q6 338 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 SMIM10L1P0DMW3 83 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 UMPSP11172 480 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 SOAT1P35610 550 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 CDK9P50750 372 aaKnown RBP17.45■□□□□ 0.38
USP39-201ENST00000323701 NRF1Q16656 503 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 ADCY4Q8NFM4 1077 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 TNIP2Q8NFZ5 429 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 EME1Q96AY2 570 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 SMIM10Q96HG1 83 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 EPS8L2Q9H6S3 715 aa17.45■□□□□ 0.38
USP39-201ENST00000323701 SCN2AQ99250 2005 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 PI4KAP42356 2102 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 SAC3D1A6NKF1 404 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 PDLIM1O00151 329 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 PROM1O43490 865 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 RETP07949 1114 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 ALPPL2P10696 532 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 BMP2P12643 396 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 CRATP43155 626 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 CCT8P50990 548 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 MANFP55145 182 aaKnown RBP17.44■□□□□ 0.38
USP39-201ENST00000323701 C21orf59P57076 290 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 RPS26P62854 115 aaKnown RBP17.44■□□□□ 0.38
USP39-201ENST00000323701 TRA2BP62995 288 aaKnown RBP17.44■□□□□ 0.38
USP39-201ENST00000323701 RGS1Q08116 209 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 RNF44Q7L0R7 432 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 RBM12BQ8IXT5 1001 aaKnown RBP17.44■□□□□ 0.38
USP39-201ENST00000323701 GAL3ST3Q96A11 431 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 FSCN3Q9NQT6 498 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 TAS2R7Q9NYW3 318 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 ANKMY1Q9P2S6 941 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 CES1P1Q9UKY3 287 aa17.44■□□□□ 0.38
USP39-201ENST00000323701 ZNF860A6NHJ4 632 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 SOCS2O14508 198 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 GMNNO75496 209 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 TNFRSF21O75509 655 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 GIMD1P0DJR0 217 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 C8orf89P0DMQ9 161 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 OLR1P78380 273 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 LRRC74AQ0VAA2 488 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 LRRC23Q53EV4 343 aaPredicted RBP17.43■□□□□ 0.38
USP39-201ENST00000323701 WDR45BQ5MNZ6 344 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 AVL9Q8NBF6 648 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 CNRIP1Q96F85 164 aaPredicted RBP17.43■□□□□ 0.38
USP39-201ENST00000323701 C7orf72A4D263 438 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 SLC9B1P1A6NJY1 282 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 DRD2P14416 443 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 FASP25445 335 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 CALRP27797 417 aaKnown RBP17.43■□□□□ 0.38
USP39-201ENST00000323701 AQP1P29972 269 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 CAPZBP47756 277 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 DHPSP49366 369 aaPredicted RBP17.43■□□□□ 0.38
USP39-201ENST00000323701 GFERP55789 205 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 RUNX2Q13950 521 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 SHBQ15464 509 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 NKAIN2Q5VXU1 208 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 IRGCQ6NXR0 463 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 OGFOD3Q6PK18 319 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 FAM92BQ6ZTR7 304 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 ANKFN1Q8N957 763 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 OR52E4Q8NGH9 312 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 MAP3K3Q99759 626 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 GLIPR2Q9H4G4 154 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 NTN4Q9HB63 628 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 SLC35C2Q9NQQ7 365 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 C1GALT1Q9NS00 363 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 KCMF1Q9P0J7 381 aa17.43■□□□□ 0.38
USP39-201ENST00000323701 ERAL1O75616 437 aaKnown RBP17.42■□□□□ 0.38
USP39-201ENST00000323701 HOXA6P31267 233 aa17.42■□□□□ 0.38
USP39-201ENST00000323701 CHI3L1P36222 383 aaPredicted RBP17.42■□□□□ 0.38
USP39-201ENST00000323701 VSX2P58304 361 aaPredicted RBP17.42■□□□□ 0.38
USP39-201ENST00000323701 SIGLEC14Q08ET2 396 aa17.42■□□□□ 0.38
USP39-201ENST00000323701 SRFBP1Q8NEF9 429 aaKnown RBP17.42■□□□□ 0.38
USP39-201ENST00000323701 OR52N2Q8NGI0 321 aa17.42■□□□□ 0.38
USP39-201ENST00000323701 SUN3Q8TAQ9 357 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms