RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PCDHGA7Q9Y5G6 932 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 A0A0D9SEW6 157 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 A0A1B0GVC2 190 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 AGAP5A6NIR3 686 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CNMDO75829 334 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SORBS2O94875 1100 aaKnown RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 KAT7O95251 611 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ATE1O95260 518 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 IL3P08700 152 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SLC35G6P0C7Q6 338 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ZNF823P16415 610 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 NCBP2P52298 156 aaKnown RBP eCLIP11.07□□□□□ -0.643e-6■□□□□ 9.2
VPS39-201ENST00000318006 GINS1Q14691 196 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 PDGFRLQ15198 375 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ABCA11PQ4W5N1 156 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CEACAM20Q6UY09 585 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 COX18Q8N8Q8 333 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 GALNT11Q8NCW6 608 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 OR8J1Q8NGP2 316 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 TMEM40Q8WWA1 233 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 NR4A3Q92570 626 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CCDC120Q96HB5 630 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 IGSF21Q96ID5 467 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 RIPOR3Q96MK2 946 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CACNG6Q9BXT2 260 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 OR51I1Q9H343 314 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 NANSQ9NR45 359 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 OSER1Q9NX31 292 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SH2B3Q9UQQ2 575 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 HMX3A6NHT5 357 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CREBL2O60519 120 aaPredicted RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 RENP00797 406 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 MAPK3P27361 379 aaPredicted RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 DCKP27707 260 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 AGTR1P30556 359 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 KDELR2P33947 212 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SEC13P55735 322 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 VAMP2P63027 116 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 TRAM1Q15629 374 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 POMZP3Q6PJE2 187 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 FAM109AQ8N4B1 249 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SHKBP1Q8TBC3 707 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SLC35F4A4IF30 521 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SOBPA7XYQ1 873 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SAP18O00422 153 aaKnown RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 KMOO15229 486 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CBSLP0DN79 551 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 TFPIP10646 304 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ADH5P11766 374 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ZNF30P17039 623 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 MAT2AP31153 395 aaKnown RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 VIPR1P32241 457 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CA5AP35218 305 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CBSP35520 551 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 LHFPL3Q86UP9 236 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 FOXRED2Q8IWF2 684 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CHDHQ8NE62 594 aaPredicted RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 OR7G1Q8NGA0 311 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 CYB5D2Q8WUJ1 264 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 IMP4Q96G21 291 aaKnown RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 PTPN18Q99952 460 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 PAAF1Q9BRP4 392 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ZDHHC4Q9NPG8 344 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 TMEM184CQ9NVA4 438 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 NLE1Q9NVX2 485 aaPredicted RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 NME4O00746 187 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 PTGESO14684 152 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 INPPL1O15357 1258 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 PCDHGA12O60330 932 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 RFPL3O75679 317 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 PAHP00439 452 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 IQCF3P0C7M6 154 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ATP1B2P14415 290 aaPredicted RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 KCNA5P22460 613 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 NRIP1P48552 1158 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 GPM6BQ13491 265 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 IRF5Q13568 498 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 C22orf39Q6P5X5 142 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 NUDT13Q86X67 352 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 GPR135Q8IZ08 494 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 SYNPOQ8N3V7 929 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 PAPD5Q8NDF8 572 aaKnown RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 COQ10AQ96MF6 247 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 FCRL3Q96P31 734 aaPredicted RBP11.07□□□□□ -0.64
VPS39-201ENST00000318006 DOHHQ9BU89 302 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 GPR62Q9BZJ7 368 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 KCNK13Q9HB14 408 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 EVA1BQ9NVM1 165 aa11.07□□□□□ -0.64
VPS39-201ENST00000318006 ZNF705EA8MWA4 302 aaPredicted RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 B8ZZF3 427 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 MEN1O00255 615 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SMAD9O15198 467 aaKnown RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 AQP9O43315 295 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 LYRM1O43325 122 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SLC35E2BP0CK96 405 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 HOXD8P13378 290 aaPredicted RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 GGT1P19440 569 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 STXBP1P61764 594 aaKnown RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 SNTA1Q13424 505 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SLBPQ14493 270 aaKnown RBP eCLIP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms