RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 NLKQ9UBE8 527 aa6.38□□□□□ -1.39
ZNF540-201ENST00000316433 ZNF222Q9UK12 451 aa6.38□□□□□ -1.39
ZNF540-201ENST00000316433 PLXNA4Q9HCM2 1894 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 COL4A2P08572 1712 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 RHPN2P1A8MT19 583 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 NFKBIEO00221 500 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 GPR171O14626 319 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 TREHO43280 583 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 LILRB3O75022 631 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 WBP4O75554 376 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 IGLV3-27P01718 113 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 SEMG1P04279 462 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 CNPP09543 421 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 RAB4AP20338 218 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ETV5P41161 510 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 CD86P42081 329 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 KCNQ1P51787 676 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 RPS7P62081 194 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 SNRPEP62304 92 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 TP53BP2Q13625 1128 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 KEAP1Q14145 624 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 USP10Q14694 798 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 PTPRCAPQ14761 206 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 RAB6CQ53S08 254 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ANKRD34AQ69YU3 496 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 HAGHLQ6PII5 290 aaPredicted RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 CUZD1Q86UP6 607 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 HIPK1Q86Z02 1210 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ZNF655Q8N720 491 aaPredicted RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 OR52K1Q8NGK4 314 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 PABPC5Q96DU9 382 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 MRPS24Q96EL2 167 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 SLC38A2Q96QD8 506 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ATOH8Q96SQ7 321 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 SOX7Q9BT81 388 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 MAGEB5Q9BZ81 275 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 RAB6CQ9H0N0 254 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 MED28Q9H204 178 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 RIMS4Q9H426 269 aaPredicted RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 DDX31Q9H8H2 851 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 TMEM248Q9NWD8 314 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 GDE1Q9NZC3 331 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 FBXO10Q9UK96 956 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 RNF215Q9Y6U7 377 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 TRBV5-3A0A0A0MS03 114 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 GLYATL1P3A0A0U1RQE8 302 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 C9orf170A2RU37 121 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 DRGXA6NNA5 263 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 KCNK1O00180 336 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ANKRD28O15084 1053 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 KDM4BO94953 1096 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 PAK4O96013 591 aaPredicted RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 OR56A5P0C7T3 313 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 FAM157BP0CG42 384 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 HAPLN1P10915 354 aaPredicted RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 NR0B1P51843 470 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 NAGLUP54802 743 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 HMGCS2P54868 508 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 CASP9P55211 416 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 UBE2IP63279 158 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 DUSP28Q4G0W2 176 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 C9orf131Q5VYM1 1079 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 TPGS2Q68CL5 300 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 AHSA2Q719I0 299 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 DET1Q7L5Y6 550 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 CILP2Q8IUL8 1156 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ENTHD1Q8IYW4 607 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 HS3ST5Q8IZT8 346 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 UBA3Q8TBC4 463 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 BRI3BPQ8WY22 251 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 KIF12Q96FN5 646 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 PEX11GQ96HA9 241 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 SPATA33Q96N06 139 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ZNF382Q96SR6 550 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 GPR61Q9BZJ8 451 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 OLA1Q9NTK5 396 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 PIGVQ9NUD9 493 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 FBXL21Q9UKT6 434 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 NEUROG3Q9Y4Z2 214 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 HES2Q9Y543 173 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 ORC6Q9Y5N6 252 aa6.37□□□□□ -1.39
ZNF540-201ENST00000316433 OAS3Q9Y6K5 1087 aaKnown RBP6.37□□□□□ -1.39
ZNF540-201ENST00000316433 LCHNA4D1U4 455 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 INMT-MINDY4F8WBC2 141 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CACNB4O00305 520 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 KPNA3O00505 521 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 UBE2CO00762 179 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PHYHO14832 338 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 STX11O75558 287 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 MLYCDO95822 493 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 STSP08842 583 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 RAP2AP10114 183 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 GAAP10253 952 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NR2C1P13056 603 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 INSRRP14616 1297 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ARSAP15289 507 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CD1DP15813 335 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 HLA-DPA1P20036 260 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 EFNA1P20827 205 aaPredicted RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms