RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 LSRQ86X29 649 aaPredicted RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 SMAD5Q99717 465 aaKnown RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 SLC30A2Q9BRI3 323 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 IL21Q9HBE4 155 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 DYRK4Q9NR20 520 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 TAS2R9Q9NYW1 312 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 BTNL2Q9UIR0 455 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PLXNA3P51805 1871 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 TRBV4-1A0A0J9YWV2 114 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 ISPDA4D126 451 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 TLR4O00206 839 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 MYL12BO14950 172 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 LZTS3O60299 673 aaPredicted RBP12.08□□□□□ -0.48
LIG1-201ENST00000263274 EIF2S1P05198 315 aaKnown RBP12.08□□□□□ -0.48
LIG1-201ENST00000263274 TYRP14679 529 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 HOXD10P28358 340 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 DSTNP60981 165 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 LRIT3Q3SXY7 679 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 ZMAT1Q5H9K5 638 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 CDKL4Q5MAI5 379 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 FRMPD2BQ6IN97 320 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 PAQR6Q6TCH4 344 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 TMPRSS11AQ6ZMR5 421 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 NRARPQ7Z6K4 114 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 RBM45Q8IUH3 476 aaKnown RBP12.08□□□□□ -0.48
LIG1-201ENST00000263274 C16orf78Q8WTQ4 265 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 NEDD4LQ96PU5 975 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 SPNS1Q9H2V7 528 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 SP140LQ9H930 580 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 PADI2Q9Y2J8 665 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 KLHL20Q9Y2M5 609 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 NRG2O14511 850 aaPredicted RBP12.08□□□□□ -0.48
LIG1-201ENST00000263274 HAT1O14929 419 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 TLX2O43763 284 aaPredicted RBP12.08□□□□□ -0.48
LIG1-201ENST00000263274 C8AP07357 584 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 PSMA1P25786 263 aaKnown RBP12.08□□□□□ -0.48
LIG1-201ENST00000263274 TNFSF8P32971 234 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 CASP3P42574 277 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 LBX1P52954 281 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 CNTN1Q12860 1018 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 TCEA2Q15560 299 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 LY6G5CQ5SRR4 150 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 DCST1Q5T197 706 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 ZNF697Q5TEC3 545 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 TTC23LQ6PF05 361 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 FAM131AQ6UXB0 335 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 Q6ZNB5 142 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 RFPL4BQ6ZWI9 263 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 OR52N2Q8NGI0 321 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 OR2A12Q8NGT7 310 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 TRMT2BQ96GJ1 504 aaKnown RBP12.08□□□□□ -0.48
LIG1-201ENST00000263274 SLC6A16Q9GZN6 736 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 SEMA3GQ9NS98 782 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 ACER3Q9NUN7 267 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 ZNF221Q9UK13 617 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 WNT6Q9Y6F9 365 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 MYO9BQ13459 2157 aa12.08□□□□□ -0.48
LIG1-201ENST00000263274 PRAMEF25A6NGN4 478 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 DYRK3O43781 588 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 TMCC2O75069 709 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 VIPR1P32241 457 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 WDR45BQ5MNZ6 344 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 METTL3Q86U44 580 aaKnown RBP12.07□□□□□ -0.48
LIG1-201ENST00000263274 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.07□□□□□ -0.48
LIG1-201ENST00000263274 DENND6BQ8NEG7 585 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 GPR151Q8TDV0 419 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 CHTF18Q8WVB6 975 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 GLYATL1Q969I3 302 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 REPS1Q96D71 796 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 C1GALT1C1Q96EU7 318 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 GABARAPL3Q9BY60 117 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 POLR2J3Q9H1A7 115 aaKnown RBP12.07□□□□□ -0.48
LIG1-201ENST00000263274 CFL2Q9Y281 166 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 C1orf226A1L170 272 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 AGAP14A8MT82 685 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 KMOO15229 486 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 SLC16A5O15375 505 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 SLC28A2O43868 658 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 GREM1O60565 184 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 CDRT1O95170 752 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 SSTR4P31391 388 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 GPR1P46091 355 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 FBXO43Q4G163 708 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 TRIM48Q8IWZ4 208 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 BTN2A2Q8WVV5 523 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 ZNF486Q96H40 463 aaPredicted RBP12.07□□□□□ -0.48
LIG1-201ENST00000263274 COQ7Q99807 217 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 ABCG4Q9H172 646 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 MMP28Q9H239 520 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 SEC14L3Q9UDX4 400 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 ENPP4Q9Y6X5 453 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 PIPSLA2A3N6 862 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 ZSCAN5BA6NJL1 495 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 H0YIV9 168 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 GPX5O75715 221 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 PTPN5P54829 565 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 USP30Q70CQ3 517 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 OXR1Q8N573 874 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 ZFP41Q8N8Y5 198 aa12.07□□□□□ -0.48
LIG1-201ENST00000263274 OR7G1Q8NGA0 311 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms