RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 WASF3Q9UPY6 502 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 FAM221BA6H8Z2 402 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 HSPA12AO43301 675 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 EMC8O43402 210 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 FARS2O95363 451 aaKnown RBP13.04□□□□□ -0.32
SF3A1-201ENST00000215793 SUOXP51687 545 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 DEFA5Q01523 94 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 RIPPLY1Q0D2K3 151 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 ELAVL3Q14576 367 aaKnown RBP13.04□□□□□ -0.32
SF3A1-201ENST00000215793 GRK1Q15835 563 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 HACD2Q6Y1H2 254 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 ZNF675Q8TD23 568 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 ZDHHC12Q96GR4 267 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 ZNF700Q9H0M5 742 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 MAFFQ9ULX9 164 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 A0A0G2JPF8 293 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 C1orf226A1L170 272 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 GRXCR1A8MXD5 290 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 HNRNPCL3B7ZW38 293 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 RNF13O43567 381 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 MAFKO60675 156 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 EEDO75530 441 aaKnown RBP13.04□□□□□ -0.32
SF3A1-201ENST00000215793 TRAPPC6AO75865 159 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 PDYNP01213 254 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 HNRNPA1P09651 372 aaKnown RBP eCLIP13.04□□□□□ -0.32
SF3A1-201ENST00000215793 HNRNPCL4P0DMR1 293 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 CLCA4Q14CN2 919 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 WDR92Q96MX6 357 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 SMG9Q9H0W8 520 aaKnown RBP13.04□□□□□ -0.32
SF3A1-201ENST00000215793 ADAMTS10Q9H324 1103 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 SH2B3Q9UQQ2 575 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 TMEM14AQ9Y6G1 99 aa13.04□□□□□ -0.32
SF3A1-201ENST00000215793 RASAL1O95294 804 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 IL3P08700 152 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 COQ5Q5HYK3 327 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 NPLQ9BXD5 320 aaPredicted RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 ABCG2Q9UNQ0 655 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 TP53I11O14683 189 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 CLIC3O95833 236 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 OR6N2Q8NGY6 317 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 ZNF431Q8TF32 576 aaPredicted RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 IGSF8Q969P0 613 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 MMABQ96EY8 250 aaPredicted RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 NSUN5Q96P11 429 aaKnown RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 EIF1AYO14602 144 aaKnown RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 CSTAP01040 98 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 OR12D1P0DN82 309 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 SRCP12931 536 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 ATF4P18848 351 aaPredicted RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 KCNJ5P48544 419 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 HERV-K104P61576 105 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 DNASE1L3Q13609 305 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 GRB7Q14451 532 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 WDTC1Q8N5D0 677 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 SH3YL1Q96HL8 342 aaPredicted RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 HSPA12BQ96MM6 686 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 PHOX2BQ99453 314 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 NUP50Q9UKX7 468 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 OR7A10O76100 309 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 SNAP29O95721 258 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 AK1P00568 194 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 RHOP08100 348 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 HMGCLP35914 325 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 ID2Q02363 134 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 HNRNPA0Q13151 305 aaKnown RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 STEAP4Q687X5 459 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 SLC25A25Q6KCM7 469 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 LRRC69Q6ZNQ3 347 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 OR5M3Q8NGP4 307 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 SAMD11Q96NU1 681 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 RAD9AQ99638 391 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 P2RY13Q9BPV8 354 aa13.03□□□□□ -0.32
SF3A1-201ENST00000215793 GTPBP2Q9BX10 602 aaKnown RBP13.03□□□□□ -0.32
SF3A1-201ENST00000215793 ZNF840PA6NDX5 716 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 INMT-MINDY4F8WBC2 141 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 S100A10P60903 97 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 PITX1P78337 314 aaPredicted RBP13.02□□□□□ -0.32
SF3A1-201ENST00000215793 PMS2P3Q13401 168 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 MPP2Q14168 576 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 UNC5DQ6UXZ4 953 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 SPATC1Q76KD6 591 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 NUP43Q8NFH3 380 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 NEIL3Q8TAT5 605 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 ISOC1Q96CN7 298 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 ZNF689Q96CS4 500 aaPredicted RBP13.02□□□□□ -0.32
SF3A1-201ENST00000215793 HS6ST2Q96MM7 605 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 GMLQ99445 158 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 SGIP1Q9BQI5 828 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 KLF15Q9UIH9 416 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 PCP4L1A6NKN8 68 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 ANXA3P12429 323 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 DRD2P14416 443 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 SYN1P17600 705 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 UGT2B10P36537 528 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 CES4AQ5XG92 561 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 RAB12Q6IQ22 244 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 BLOC1S3Q6QNY0 202 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 UBE2Q1Q7Z7E8 422 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 PTCHD1Q96NR3 888 aa13.02□□□□□ -0.32
SF3A1-201ENST00000215793 DKKL1Q9UK85 242 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms