RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	DEPDC1	Q5TB30	811 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	KHDRBS2	Q5VWX1	349 aa	Known RBP	14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	ZNF793	Q6ZN11	406 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	SCUBE1	Q8IWY4	988 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	RNF175	Q8N4F7	328 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	ACOT4	Q8N9L9	421 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	TMEM52	Q8NDY8	209 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	OR1N1	Q8NGS0	311 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	ATP6V1E2	Q96A05	226 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	MTERF1	Q99551	399 aa	Known RBP	14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	CENPK	Q9BS16	269 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	OR51B5	Q9H339	312 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	DMRT3	Q9NQL9	472 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	STMN3	Q9NZ72	180 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	PCTP	Q9UKL6	214 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	RNF11	Q9Y3C5	154 aa		14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	COPG1	Q9Y678	874 aa	Known RBP	14.09	□□□□□ -0.15
PHGDH-231	ENST00000641939	TRAV17	A0A0B4J275	112 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	SAP18	O00422	153 aa	Known RBP	14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	RTCA	O00442	366 aa	Known RBP	14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	CYR61	O00622	381 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	OR7A17	O14581	309 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	SCEL	O95171	688 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	CLDN9	O95484	217 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	F10	P00742	488 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	SBK3	P0C264	359 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	HIST1H1T	P22492	207 aa	Predicted RBP	14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	GNLY	P22749	145 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	PTX3	P26022	381 aa	Predicted RBP	14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	RAP1GDS1	P52306	607 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	TAS2R50	P59544	299 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	MEP1A	Q16819	746 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	ACER2	Q5QJU3	275 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	FCRLB	Q6BAA4	426 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	LCA5	Q86VQ0	697 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	TMEM151A	Q8N4L1	468 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	SLC5A8	Q8N695	610 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	OR52B6	Q8NGF0	335 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	ACMSD	Q8TDX5	336 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	ELP5	Q8TE02	316 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	UBLCP1	Q8WVY7	318 aa	Predicted RBP	14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	RGMA	Q96B86	450 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	CSF3R	Q99062	836 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	NTMT1	Q9BV86	223 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	AGPAT4	Q9NRZ5	378 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	KCMF1	Q9P0J7	381 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	ABI3	Q9P2A4	366 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	TBK1	Q9UHD2	729 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	NTNG1	Q9Y2I2	539 aa		14.08	□□□□□ -0.16
PHGDH-231	ENST00000641939	USP9Y	O00507	2555 aa	Predicted RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	SYNDIG1L	A6NDD5	238 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	OR5H15	A6NDH6	313 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939		A8MT66	165 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939		A8MUA0	341 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	TCP11X1	B4DZS4	312 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	TGFBR3L	H3BV60	316 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	CTNS	O60931	367 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	RPS17	P08708	135 aa	Known RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	TAC1	P20366	129 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	UQCRFS1	P47985	274 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	ARFIP1	P53367	373 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	RPS13	P62277	151 aa	Known RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	TERF2	Q15554	542 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	ZRSR2	Q15696	482 aa	Known RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	OR4C11	Q6IEV9	310 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	RPUSD3	Q6P087	351 aa	Known RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	CRLF3	Q8IUI8	442 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	BEST3	Q8N1M1	668 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	NFAM1	Q8NET5	270 aa	Predicted RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	WDR20	Q8TBZ3	569 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	MZB1	Q8WU39	189 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	NSUN5	Q96P11	429 aa	Known RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	CDK15	Q96Q40	435 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	BARD1	Q99728	777 aa	Known RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	MAPKAP1	Q9BPZ7	522 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	C1QTNF3	Q9BXJ4	246 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	ZBTB26	Q9HCK0	441 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	PNO1	Q9NRX1	252 aa	Known RBP	14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	PSD3	Q9NYI0	1048 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	TMEM216	Q9P0N5	145 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	CLDN16	Q9Y5I7	305 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	SPACA6	W5XKT8	324 aa		14.07	□□□□□ -0.16
PHGDH-231	ENST00000641939	BLACE	A4D250	179 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	CLEC18A	A5D8T8	446 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	GOLGA8R	I6L899	631 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	FOXE1	O00358	373 aa	Predicted RBP	14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	PLPP1	O14494	284 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	GSTA1	P08263	222 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	PYGB	P11216	843 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	NEK2	P51955	445 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	TRAF3	Q13114	568 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	CUL3	Q13618	768 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	NR6A1	Q15406	480 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	CLEC18B	Q6UXF7	455 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	RPS27L	Q71UM5	84 aa	Known RBP	14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	MILR1	Q7Z6M3	343 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	CLNK	Q7Z7G1	428 aa		14.06	□□□□□ -0.16
PHGDH-231	ENST00000641939	LGI4	Q8N135	537 aa		14.06	□□□□□ -0.16

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms