RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 CRB2Q5IJ48 1285 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 RGMAQ96B86 450 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 NODALQ96S42 347 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 SLC28A3Q9HAS3 691 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 TMEM184CQ9NVA4 438 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 SNX5Q9Y5X3 404 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 LYVE1Q9Y5Y7 322 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 HSPE1-MOB4S4R3N1 261 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 TNFRSF11BO00300 401 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 PDPK1O15530 556 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 TMPRSS11DO60235 418 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 SERPIND1P05546 499 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 NTSR1P30989 418 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 FMO3P31513 532 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 MAPK10P53779 464 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 DSTNP60981 165 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 TUBA3CQ13748 450 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 KIAA1614Q5VZ46 1190 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 OR2A1Q8NGT9 310 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 APOL4Q9BPW4 351 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 ANGPT4Q9Y264 503 aa20.49■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3DA0A087WVF3 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3IA0A087WXS9 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3EA0A087X179 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3KA0A087X1G2 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3FA6NER0 549 aaPredicted RBP20.48■□□□□ 0.87
CLN6-224ENST00000638076 PRAMEF25A6NGN4 478 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3LB9A6J9 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 SCAMP1O15126 338 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 NOL3O60936 208 aaKnown RBP20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3HP0C7X1 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 ADPRHP54922 357 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 NPRL3Q12980 569 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3GQ6DHY5 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 GTF2IRD2BQ6EKJ0 949 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3CQ6IPX1 549 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 UBE3DQ7Z6J8 389 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 B3GNT8Q7Z7M8 397 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 GTF2IRD2Q86UP8 949 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 FAM20CQ8IXL6 584 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBC1D3Q8IZP1 549 aaPredicted RBP20.48■□□□□ 0.87
CLN6-224ENST00000638076 OR5P2Q8WZ92 322 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 ZNF347Q96SE7 839 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 CCDC90BQ9GZT6 254 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 RMI1Q9H9A7 625 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TMEM9Q9P0T7 183 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 MSRAQ9UJ68 235 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 ZNF451Q9Y4E5 1061 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 A0A0G2JN53 185 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 A0A1W2PPW3 197 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 PDZK1P1A8MUH7 402 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 TBX19O60806 448 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 PKLRP30613 574 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 PLA2G16P53816 162 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 CEACAM20Q6UY09 585 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 SMYD1Q8NB12 490 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 MAGED4Q96JG8 741 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 ZNF300Q96RE9 604 aaPredicted RBP20.48■□□□□ 0.87
CLN6-224ENST00000638076 APOOQ9BUR5 198 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 NAALAD2Q9Y3Q0 740 aa20.48■□□□□ 0.87
CLN6-224ENST00000638076 IFNA14P01570 189 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 PCBP3P57721 371 aaKnown RBP20.47■□□□□ 0.87
CLN6-224ENST00000638076 RPS26P62854 115 aaKnown RBP20.47■□□□□ 0.87
CLN6-224ENST00000638076 LAIR1Q6GTX8 287 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 TSPYL5Q86VY4 417 aaPredicted RBP20.47■□□□□ 0.87
CLN6-224ENST00000638076 AMER3Q8N944 861 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 OR52E1Q8NGJ3 308 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 OR2L8Q8NGY9 312 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 OR52J3Q8NH60 311 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 GIPC3Q8TF64 312 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 FAM131CQ96AQ9 280 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 EXOSC8Q96B26 276 aaKnown RBP20.47■□□□□ 0.87
CLN6-224ENST00000638076 DGCR6LQ9BY27 220 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 PRDM8Q9NQV8 689 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 TEX10Q9NXF1 929 aaPredicted RBP20.47■□□□□ 0.87
CLN6-224ENST00000638076 RAB23Q9ULC3 237 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 MYO9BQ13459 2157 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 PRAMEF33A0A0G2JMD5 474 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 SLC31A1O15431 190 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 PCMT1P22061 227 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 TMBIM6P55061 237 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 SPIBQ01892 262 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 HSPB3Q12988 150 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 FGD3Q5JSP0 725 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 SAXO2Q658L1 398 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 SDE2Q6IQ49 451 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 NATD1Q8N6N6 113 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 CREB3L4Q8TEY5 395 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 NEURL3Q96EH8 262 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 GABRG3Q99928 467 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 RAB11FIP5Q9BXF6 653 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 C1QTNF7Q9BXJ2 289 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 THSD1Q9NS62 852 aa20.47■□□□□ 0.87
CLN6-224ENST00000638076 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.47■□□□□ 0.87
CLN6-224ENST00000638076 PRR19A6NJB7 356 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 PPM1DO15297 605 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 PRAMEF10O60809 474 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 CLEC3AO75596 197 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 CDH12P55289 794 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 PCBP4P57723 403 aaKnown RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms