RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CTIFO43310 598 aaKnown RBP13.35□□□□□ -0.27
CLN3-249ENST00000636685 ERN1O75460 977 aaKnown RBP13.35□□□□□ -0.27
CLN3-249ENST00000636685 SOX30O94993 753 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 CPA2P48052 419 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 UBASH3AP57075 661 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 RUNX1T1Q06455 604 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 FOXF2Q12947 444 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 DUSP8Q13202 625 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 PWP1Q13610 501 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 CUL1Q13616 776 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 BMPR2Q13873 1038 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 PRAMEF20Q5VT98 475 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 NIPAL1Q6NVV3 410 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 SCUBE1Q8IWY4 988 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLN3-249ENST00000636685 LRRC25Q8N386 305 aaPredicted RBP13.35□□□□□ -0.27
CLN3-249ENST00000636685 RASGEF1CQ8N431 466 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 ZNF321PQ8N8H1 164 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 PRELID2Q8N945 189 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 C9orf106Q8NAJ2 232 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 PEX13Q92968 403 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 PIGQQ9BRB3 760 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 NDRG3Q9UGV2 375 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 CAMK2AQ9UQM7 478 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 ZNF148Q9UQR1 794 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 MYOCOSA0A1B0GUC4 107 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 MBD3L3A6NE82 208 aaPredicted RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 CD8B2A6NJW9 211 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 GOLGA8KD6RF30 607 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 E5RI56 91 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 H3BMM5 538 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 GOLGA8TH3BQL2 631 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 GFYI3L273 518 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 ZBTB14O43829 449 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 ZNF189O75820 626 aaPredicted RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 ESR1P03372 595 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 TP53P04637 393 aaPredicted RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 TMIGD3P0DMS9 266 aaPredicted RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 PTPN7P35236 360 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 HNRNPFP52597 415 aaKnown RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 KCNJ2P63252 427 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 RGS1Q08116 209 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 CHRFAM7AQ494W8 412 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 OPN5Q6U736 354 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 MEIOBQ8N635 442 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 TMEM52Q8NDY8 209 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 GIMAP7Q8NHV1 300 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 MBD3L2Q8NHZ7 208 aaPredicted RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 NT5CQ8TCD5 201 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 JSRP1Q96MG2 331 aaPredicted RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 C19orf24Q9BVV8 132 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 PCBD2Q9H0N5 130 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 KLHL31Q9H511 634 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 CLK4Q9HAZ1 481 aaKnown RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 ETNK1Q9HBU6 452 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 ADAP2Q9NPF8 381 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 TREX1Q9NSU2 369 aa13.34□□□□□ -0.27
CLN3-249ENST00000636685 BOKQ9UMX3 212 aaPredicted RBP13.34□□□□□ -0.27
CLN3-249ENST00000636685 CTAGE15A4D2H0 777 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 ERI2A8K979 691 aaKnown RBP13.33□□□□□ -0.28
CLN3-249ENST00000636685 C4orf51C9J302 202 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 TLX2O43763 284 aaPredicted RBP13.33□□□□□ -0.28
CLN3-249ENST00000636685 TJP3O95049 919 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 NMBRP28336 390 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 CLCN7P51798 805 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 HADHBP55084 474 aaKnown RBP13.33□□□□□ -0.28
CLN3-249ENST00000636685 CRADDP78560 199 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 IQCB1Q15051 598 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 SLC22A10Q63ZE4 541 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 CYHR1Q6ZMK1 362 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 MBOAT1Q6ZNC8 495 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 UBE2R2Q712K3 238 aaPredicted RBP13.33□□□□□ -0.28
CLN3-249ENST00000636685 CTAGE6Q86UF2 777 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 OR8K1Q8NGG5 319 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 CCDC42Q96M95 316 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 WFIKKN1Q96NZ8 548 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 HS3ST6Q96QI5 342 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 DNAJC7Q99615 494 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 PRDM14Q9GZV8 571 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 NHEJ1Q9H9Q4 299 aaPredicted RBP13.33□□□□□ -0.28
CLN3-249ENST00000636685 PROK2Q9HC23 129 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 SH2D2AQ9NP31 389 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 PRTFDC1Q9NRG1 225 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 QPCTLQ9NXS2 382 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 INTUQ9ULD6 942 aa13.33□□□□□ -0.28
CLN3-249ENST00000636685 NRDCO43847 1150 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 CD5LO43866 347 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 LRATO95237 230 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 MPC1LP0DKB6 136 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 PAX1P15863 534 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 NPPBP16860 134 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 GDF1P27539 372 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 ARNTP27540 789 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 CTNNA1P35221 906 aaKnown RBP13.32□□□□□ -0.28
CLN3-249ENST00000636685 CCR8P51685 355 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 ATP5J2P56134 94 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 RNF4P78317 190 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 SLC13A2Q13183 592 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 NAE1Q13564 534 aa13.32□□□□□ -0.28
CLN3-249ENST00000636685 ELAVL1Q15717 326 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms