RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ATP6V1G3Q96LB4 118 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 QRFPRQ96P65 431 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 IP6K3Q96PC2 410 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 NPLQ9BXD5 320 aaPredicted RBP17.06■□□□□ 0.32
CLN3-239ENST00000628023 BRF2Q9HAW0 419 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 EML4Q9HC35 981 aaKnown RBP17.06■□□□□ 0.32
CLN3-239ENST00000628023 NMRK1Q9NWW6 199 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 PSD3Q9NYI0 1048 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 AHSPQ9NZD4 102 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 PPT2Q9UMR5 302 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 FIS1Q9Y3D6 152 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 CCDC88CQ9P219 2028 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 HECTD1Q9ULT8 2610 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 UBR5O95071 2799 aaPredicted RBP17.05■□□□□ 0.32
CLN3-239ENST00000628023 PLPP1O14494 284 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 BIRC5O15392 142 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 B4GALT2O60909 372 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 DNAJB6O75190 326 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 SEMA3DO95025 777 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 ETHE1O95571 254 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 HIST1H1TP22492 207 aaPredicted RBP17.05■□□□□ 0.32
CLN3-239ENST00000628023 ATP5A1P25705 553 aaKnown RBP17.05■□□□□ 0.32
CLN3-239ENST00000628023 SERPINB5P36952 375 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 RAB38P57729 211 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 CHI3L2Q15782 390 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 OR4C11Q6IEV9 310 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 LAPTM4BQ86VI4 370 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 NUDT13Q86X67 352 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 TMEM151BQ8IW70 566 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 ACOT4Q8N9L9 421 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 METTL21AQ8WXB1 218 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 SORBS1Q9BX66 1292 aaKnown RBP17.05■□□□□ 0.32
CLN3-239ENST00000628023 VN1R1Q9GZP7 353 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 PRDM7Q9NQW5 492 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 KCNMB2Q9Y691 235 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 SPACA6W5XKT8 324 aa17.05■□□□□ 0.32
CLN3-239ENST00000628023 ARGFXA6NJG6 315 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 CHRNGP07510 517 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 C8orf89P0DMQ9 161 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 UROSP10746 265 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 HSD3B1P14060 373 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 ACPPP15309 386 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 HSD3B2P26439 372 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 TSFMP43897 325 aaKnown RBP17.04■□□□□ 0.32
CLN3-239ENST00000628023 ARFIP1P53367 373 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 FOXA1P55317 472 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 CSTF3Q12996 717 aaKnown RBP17.04■□□□□ 0.32
CLN3-239ENST00000628023 RUNX2Q13950 521 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 MPP2Q14168 576 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 TUBB8Q3ZCM7 444 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 CYP20A1Q6UW02 462 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 ZNF793Q6ZN11 406 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 PPP1R32Q7Z5V6 425 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 SHISA5Q8N114 240 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 EFCAB3Q8N7B9 438 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 FAM47BQ8NA70 645 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 EPN3Q9H201 632 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 MRPS33Q9Y291 106 aaKnown RBP17.04■□□□□ 0.32
CLN3-239ENST00000628023 HS3ST3B1Q9Y662 390 aa17.04■□□□□ 0.32
CLN3-239ENST00000628023 ARHGAP10A1A4S6 786 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 ALOX12BO75342 701 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 SCELO95171 688 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 HSPA4LO95757 839 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 CHEK2O96017 543 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 SERPINE1P05121 402 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 CYC1P08574 325 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 DHRS4L1P0CG22 281 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 HTR6P50406 440 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 RRADP55042 308 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 LIM2P55344 173 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 EEF1A2Q05639 463 aaKnown RBP17.03■□□□□ 0.32
CLN3-239ENST00000628023 ZNF33BQ06732 778 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 SLAMF1Q13291 335 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 ABRAXAS2Q15018 415 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 IMPG1Q17R60 797 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 ARL13AQ5H913 290 aaPredicted RBP17.03■□□□□ 0.32
CLN3-239ENST00000628023 CLEC6AQ6EIG7 209 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 SCIMPQ6UWF3 145 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 PAGE2Q7Z2X7 111 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 ZCCHC7Q8N3Z6 543 aaKnown RBP17.03■□□□□ 0.32
CLN3-239ENST00000628023 GBP7Q8N8V2 638 aaPredicted RBP17.03■□□□□ 0.32
CLN3-239ENST00000628023 NACC2Q96BF6 587 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 C8orf44Q96CB5 159 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 FER1L6-AS2Q96M78 137 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 MRPL1Q9BYD6 325 aaKnown RBP17.03■□□□□ 0.32
CLN3-239ENST00000628023 LYRM4Q9HD34 91 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 P4HTMQ9NXG6 502 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 VPS29Q9UBQ0 182 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 C19orf25Q9UFG5 118 aaPredicted RBP17.03■□□□□ 0.32
CLN3-239ENST00000628023 FBXW2Q9UKT8 454 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 DAPP1Q9UN19 280 aa17.03■□□□□ 0.32
CLN3-239ENST00000628023 FAM227AF5H4B4 570 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 SOCS6O14544 535 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 PCDH17O14917 1159 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 AZIN1O14977 448 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 SASH3O75995 380 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 BGNP21810 368 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 SERPINB3P29508 390 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 SLC18A1P54219 525 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 KLRB1Q12918 225 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms