RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ATP6V1E2Q96A05 226 aa15.2■□□□□ 0.02
LSM4-206ENST00000600289 CCDC126Q96EE4 140 aa15.2■□□□□ 0.02
LSM4-206ENST00000600289 L3HYPDHQ96EM0 354 aa15.2■□□□□ 0.02
LSM4-206ENST00000600289 THOC3Q96J01 351 aaKnown RBP15.2■□□□□ 0.02
LSM4-206ENST00000600289 NSUN5Q96P11 429 aaKnown RBP15.2■□□□□ 0.02
LSM4-206ENST00000600289 AGAP4Q96P64 663 aa15.2■□□□□ 0.02
LSM4-206ENST00000600289 PARD6BQ9BYG5 372 aa15.2■□□□□ 0.02
LSM4-206ENST00000600289 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.2■□□□□ 0.02
LSM4-206ENST00000600289 PLAAQ9Y263 795 aa15.2■□□□□ 0.02
LSM4-206ENST00000600289 MRPS33Q9Y291 106 aaKnown RBP15.2■□□□□ 0.02
LSM4-206ENST00000600289 STK38LQ9Y2H1 464 aa15.2■□□□□ 0.02
LSM4-206ENST00000600289 V9GYY5 206 aaPredicted RBP15.2■□□□□ 0.02
LSM4-206ENST00000600289 ZFHX3Q15911 3703 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 A0A0G2JN53 185 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 PRMT3O60678 531 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 CDC123O75794 336 aaPredicted RBP15.19■□□□□ 0.02
LSM4-206ENST00000600289 TGFB1P01137 390 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 IMPDH1P20839 514 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 HIST1H1TP22492 207 aaPredicted RBP15.19■□□□□ 0.02
LSM4-206ENST00000600289 ATP5A1P25705 553 aaKnown RBP15.19■□□□□ 0.02
LSM4-206ENST00000600289 CERS1P27544 350 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 SOX11P35716 441 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 CCT5P48643 541 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 PRKAA2P54646 552 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 LIM2P55344 173 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 RAPSNQ13702 412 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 NSDHLQ15738 373 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 EXT1Q16394 746 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 CPSF6Q16630 551 aaKnown RBP eCLIP15.19■□□□□ 0.02
LSM4-206ENST00000600289 CRB2Q5IJ48 1285 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 ZNF793Q6ZN11 406 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 MYLK4Q86YV6 388 aaPredicted RBP15.19■□□□□ 0.02
LSM4-206ENST00000600289 ZNF595Q8IYB9 648 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 RBMXL3Q8N7X1 1067 aaKnown RBP15.19■□□□□ 0.02
LSM4-206ENST00000600289 OR4F6Q8NGB9 312 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 RDH11Q8TC12 318 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 TSLPQ969D9 159 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 PNPLA2Q96AD5 504 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 RGMAQ96B86 450 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 TMEM237Q96Q45 408 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 LMF1Q96S06 567 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 CENPKQ9BS16 269 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 TMEM109Q9BVC6 243 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 KCMF1Q9P0J7 381 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 TRPS1Q9UHF7 1281 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 GRID1Q9ULK0 1009 aa15.19■□□□□ 0.02
LSM4-206ENST00000600289 CELSR1Q9NYQ6 3014 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 OR2W5A6NFC9 320 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 G3V2L1 256 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 CYR61O00622 381 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 PLPP1O14494 284 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 B4GALT2O60909 372 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 SORBS2O94875 1100 aaKnown RBP15.18■□□□□ 0.02
LSM4-206ENST00000600289 SEMA3DO95025 777 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 PROCP04070 461 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 RPS13P62277 151 aaKnown RBP15.18■□□□□ 0.02
LSM4-206ENST00000600289 CLCQ05315 142 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 MFAP5Q13361 173 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 DDX39BQ13838 428 aaKnown RBP15.18■□□□□ 0.02
LSM4-206ENST00000600289 AP5B1Q2VPB7 878 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 UNC50Q53HI1 259 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 SFT2D3Q587I9 215 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 FRG2Q64ET8 278 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 OR4C11Q6IEV9 310 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 H3F3CQ6NXT2 135 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 ISLR2Q6UXK2 745 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 ZYG11AQ6WRX3 759 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 ZCCHC7Q8N3Z6 543 aaKnown RBP15.18■□□□□ 0.02
LSM4-206ENST00000600289 ACOT4Q8N9L9 421 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 C7orf57Q8NEG2 295 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 OR2W6PQ8NHA6 318 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 M1APQ8TC57 530 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 PPP4R1Q8TF05 950 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 MIB2Q96AX9 1013 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 PTCHD1Q96NR3 888 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 CDK15Q96Q40 435 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 FRG2BQ96QU4 278 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 ZNF382Q96SR6 550 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 MTERF1Q99551 399 aaKnown RBP15.18■□□□□ 0.02
LSM4-206ENST00000600289 SERPINI1Q99574 410 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 LPAR4Q99677 370 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 ZNF717Q9BY31 904 aaPredicted RBP15.18■□□□□ 0.02
LSM4-206ENST00000600289 OR51B5Q9H339 312 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 MMP25Q9NPA2 562 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 SEMA4BQ9NPR2 832 aaPredicted RBP15.18■□□□□ 0.02
LSM4-206ENST00000600289 CLDN16Q9Y5I7 305 aa15.18■□□□□ 0.02
LSM4-206ENST00000600289 SMIM23A6NLE4 172 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 FAM227AF5H4B4 570 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 CLDN4O14493 209 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 COPEO14579 308 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 PLIN3O60664 434 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 SEC24DO94855 1032 aaPredicted RBP15.17■□□□□ 0.02
LSM4-206ENST00000600289 MLYCDO95822 493 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 KRT4P19013 534 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 SSR2P43308 183 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 OR4D2P58180 307 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 BTG2P78543 158 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 TERF2Q15554 542 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 SLC6A19Q695T7 634 aa15.17■□□□□ 0.02
LSM4-206ENST00000600289 LETMD1Q6P1Q0 360 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms