RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PPP4R1Q8TF05 950 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 PSMF1Q92530 271 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 RGMAQ96B86 450 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 MAGEB10Q96LZ2 347 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 SLC29A3Q9BZD2 475 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 SLC25A18Q9H1K4 315 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 ZNF552Q9H707 407 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 DDX31Q9H8H2 851 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 ZNF160Q9HCG1 818 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 LYRM4Q9HD34 91 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 TP53TG5Q9Y2B4 290 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 TCRBV16S1A1N1A0A5B0 115 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 SERTM1A2A2V5 107 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 B4GALT2O60909 372 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 SEMA3DO95025 777 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 CHN1P15882 459 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 H2AFXP16104 143 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 MAOAP21397 527 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 HNRNPH2P55795 449 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 GALNT1Q10472 559 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 ABRAXAS2Q15018 415 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 TCTN3Q6NUS6 607 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 CCNYL1Q8N7R7 359 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 FAM47BQ8NA70 645 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 HBEGFQ99075 208 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 SMAD5Q99717 465 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 ROGDIQ9GZN7 287 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 BRF2Q9HAW0 419 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 ATP13A2Q9NQ11 1180 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 ASB4Q9Y574 426 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 ACTL7BQ9Y614 415 aa18.32■□□□□ 0.52
SHKBP1-221ENST00000599833 TRIM13O60858 407 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 DHRS4L1P0CG22 281 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 JAK1P23458 1154 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 ARL1P40616 181 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 SSR2P43308 183 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 TGM3Q08188 693 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 IFT88Q13099 833 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 AIMP2Q13155 320 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 CASP8Q14790 479 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 MYBPC3Q14896 1274 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 CPEB2Q7Z5Q1 589 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 METTL4Q8N3J2 472 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 C9orf43Q8TAL5 461 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 C11orf24Q96F05 449 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 SERPINI1Q99574 410 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 MID1IP1Q9NPA3 183 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 MID2Q9UJV3 735 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 SNX6Q9UNH7 406 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 STK38LQ9Y2H1 464 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 MMACHCQ9Y4U1 282 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 TIMM22Q9Y584 194 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 RELNP78509 3460 aa18.31■□□□□ 0.52
SHKBP1-221ENST00000599833 A0A088AWK7 358 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 A6NL46 340 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 MKRN2OSH3BPM6 223 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ENO1P06733 434 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 BPGMP07738 259 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ZNF10P21506 573 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 TPP2P29144 1249 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 NAA20P61599 178 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 SLAMF1Q13291 335 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 RAPSNQ13702 412 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 NSDHLQ15738 373 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 AP5B1Q2VPB7 878 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 SGO1Q5FBB7 561 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 MFSD4BQ5TF39 518 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 CCDC63Q8NA47 563 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 CLEC1AQ8NC01 280 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ADAMTS18Q8TE60 1221 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 SELENOMQ8WWX9 145 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 TLCD1Q96CP7 247 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 SLC25A23Q9BV35 468 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 MRPL1Q9BYD6 325 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ACPTQ9BZG2 426 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ELOVL6Q9H5J4 265 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 COPS7BQ9H9Q2 264 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 TMBIM4Q9HC24 238 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ZBTB20Q9HC78 741 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 PRDM9Q9NQV7 894 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ZNF71Q9NQZ8 489 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 ATG4BQ9Y4P1 393 aa18.3■□□□□ 0.52
SHKBP1-221ENST00000599833 CNTRLQ7Z7A1 2325 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 NSG1A0A0A6YYJ2 146 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 PRMT3O60678 531 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 SEC24DO94855 1032 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 CHRNGP07510 517 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 SFTPCP11686 197 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 PPP2R1BP30154 601 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 HSD17B7P56937 341 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 PHEXP78562 749 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 SFT2D3Q587I9 215 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 C18orf63Q68DL7 685 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 TTC19Q6DKK2 380 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 PARP9Q8IXQ6 854 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 ZNF595Q8IYB9 648 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 NFAM1Q8NET5 270 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 METTL6Q8TCB7 284 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 UCN3Q969E3 161 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 ANKRD9Q96BM1 317 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms