RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ABRAXAS2Q15018 415 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SWT1Q5T5J6 900 aaKnown RBP9.41□□□□□ -0.9
LIG3-216ENST00000593099 TMEM92Q6UXU6 159 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 RTL4Q6ZR62 310 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 TECPR1Q7Z6L1 1165 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 YTHDF3Q7Z739 585 aaKnown RBP9.41□□□□□ -0.9
LIG3-216ENST00000593099 ARMC8Q8IUR7 673 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ARL14Q8N4G2 192 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 FAM47BQ8NA70 645 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 FAM98AQ8NCA5 519 aaKnown RBP9.41□□□□□ -0.9
LIG3-216ENST00000593099 PIK3C3Q8NEB9 887 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 C10orf82Q8WW14 230 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ECHDC3Q96DC8 303 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 RNF31Q96EP0 1072 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ALG14Q96F25 216 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 MAU2Q9Y6X3 613 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 A0A0G2JPF8 293 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 HNRNPCL3B7ZW38 293 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 CLEC3AO75596 197 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 C6orf47O95873 294 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 HNRNPCL4P0DMR1 293 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 BCKDHAP12694 445 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 FOLR3P41439 243 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 EMP2P54851 167 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ERVPABLB-1P60509 514 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 GPR18Q14330 331 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 RNF111Q6ZNA4 994 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 KRT77Q7Z794 578 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 DHRSXQ8N5I4 330 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 OR4K1Q8NGD4 311 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 AGAP11Q8TF27 550 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 COL21A1Q96P44 957 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SLC38A2Q96QD8 506 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SERINC2Q96SA4 455 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 TTYH1Q9H313 450 aaPredicted RBP9.41□□□□□ -0.9
LIG3-216ENST00000593099 ADAMTS6Q9UKP5 1117 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 EFCAB7A8K855 629 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 CLOCKO15516 846 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 DLGAP3O95886 979 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ZXDAP98168 799 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SLC34A1Q06495 639 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 GBX1Q14549 363 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 METRNLQ641Q3 311 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 TMEM215Q68D42 235 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 LRRC25Q8N386 305 aaPredicted RBP9.41□□□□□ -0.9
LIG3-216ENST00000593099 PDPRQ8NCN5 879 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 LKAAEAR1Q8TD35 194 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ZFPM2Q8WW38 1151 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ASB12Q8WXK4 309 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 SMPDL3BQ92485 455 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 GAL3ST3Q96A11 431 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 ZNF285Q96NJ3 590 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 PPIEQ9UNP9 301 aaKnown RBP9.41□□□□□ -0.9
LIG3-216ENST00000593099 LYVE1Q9Y5Y7 322 aa9.41□□□□□ -0.9
LIG3-216ENST00000593099 FAM25AB3EWG3 89 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 FAM25CB3EWG5 89 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 FAM25GB3EWG6 89 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 CNOT3O75175 753 aaKnown RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 PORP16435 677 aaPredicted RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 CCNA2P20248 432 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 ITGA3P26006 1051 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 SIM1P81133 766 aaPredicted RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 GALNT1Q10472 559 aaPredicted RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 SCARB2Q14108 478 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 SERTAD2Q14140 314 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 IFI44LQ53G44 452 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 DCAF12Q5T6F0 453 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 ZNF683Q8IZ20 524 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 DPP10Q8N608 796 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 FITM2Q8N6M3 262 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 PHF21AQ96BD5 680 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 ANKRD27Q96NW4 1050 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 SEMA6AQ9H2E6 1030 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 TPT1P8Q9HAU6 139 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 A0A1W2PP18 115 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 CXCR6O00574 342 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 TSC22D2O75157 780 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 SAGP10523 405 aaPredicted RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 ACADSP16219 412 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 SLC7A1P30825 629 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 MSX2P35548 267 aaPredicted RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 MPLP40238 635 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 CASP9P55211 416 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 CDC42P60953 191 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 ENPP2Q13822 863 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 TAF13Q15543 124 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 MTX3Q5HYI7 312 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 ATG9BQ674R7 924 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 CCDC81Q6ZN84 652 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 OR2L5Q8NG80 312 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 GAB3Q8WWW8 586 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 C1GALT1Q9NS00 363 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 C3orf18Q9UK00 162 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 PLEKHM1Q9Y4G2 1056 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 R4GN57 208 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 A0A0A6YYC8 382 aaPredicted RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 MAGEA13PA6NCF6 341 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 I3L1I5 382 aaPredicted RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 SDHDO14521 159 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 SLCO2B1O94956 709 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms