RNA–Protein interactions for RNA: ENST00000590619.1

DNMT1-222, Transcript of DNA methyltransferase 1, human

TSL 1 (best)

Gene DNMT1, Length 231 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-222	ENST00000590619	TMEM89	A2RUT3	159 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	LGALS16	A8MUM7	142 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619		F8W8V4	182 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	GFY	I3L273	518 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	MYO1C	O00159	1063 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	SSX4	O60224	188 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	CST8	O60676	142 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	VENTX	O95231	258 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	TPM2	P07951	284 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	RBL1	P28749	1068 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	CCKAR	P32238	428 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	COIL	P38432	576 aa	Predicted RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	EIF3B	P55884	814 aa	Known RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	KCNJ2	P63252	427 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	EEF1A1	P68104	462 aa	Known RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	KLHL30	Q0D2K2	578 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	GAB1	Q13480	694 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	BMPR2	Q13873	1038 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	HERC3	Q15034	1050 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	BEX5	Q5H9J7	111 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	PRAMEF20	Q5VT98	475 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	EEF1A1P5	Q5VTE0	462 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	CAPN13	Q6MZZ7	669 aa	Predicted RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	OPN5	Q6U736	354 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	LYPD8	Q6UX82	237 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	HSDL2	Q6YN16	418 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ADGRE4P	Q86SQ3	457 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	LDB1	Q86U70	411 aa	Predicted RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	GCNT2	Q8N0V5	402 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ZNF321P	Q8N8H1	164 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ZNF740	Q8NDX6	193 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	PPHLN1	Q8NEY8	458 aa	Known RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	GSDMB	Q8TAX9	411 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	PAQR8	Q8TEZ7	354 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ZNF480	Q8WV37	535 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	WNT2B	Q93097	391 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ABTB1	Q969K4	478 aa	Predicted RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	GTPBP3	Q969Y2	492 aa	Known RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	FOPNL	Q96NB1	174 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ZFP3	Q96NJ6	502 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	UCN2	Q96RP3	112 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	TM9SF2	Q99805	663 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	TBL1Y	Q9BQ87	522 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	TUBA1C	Q9BQE3	449 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	TSSK1B	Q9BXA7	367 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	GBA3	Q9H227	469 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ZNHIT6	Q9NWK9	470 aa	Known RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	ELOVL5	Q9NYP7	299 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	FEZ2	Q9UHY8	353 aa	Predicted RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	PACSIN3	Q9UKS6	424 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	BOK	Q9UMX3	212 aa	Predicted RBP	5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	PCDHA13	Q9Y5I0	950 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	MALRD1	Q5VYJ5	2156 aa		5.87	□□□□□ -1.47
DNMT1-222	ENST00000590619	NCKAP5	O14513	1909 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619		A0A1W2PNV4	684 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ELOA3D	A6NLF2	546 aa	Predicted RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	TGFBR3L	H3BV60	316 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	SMAP	O00193	183 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	TMPRSS2	O15393	492 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	TRIM3	O75382	744 aa	Predicted RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	SMNDC1	O75940	238 aa	Known RBP eCLIP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	SLC16A8	O95907	504 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	GOT2	P00505	430 aa	Known RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	CD8A	P01732	235 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	HPN	P05981	417 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	CYP4B1	P13584	511 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	POU2F1	P14859	743 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	CPN1	P15169	458 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ZNF16	P17020	682 aa	Predicted RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ALOX12	P18054	663 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	HRH2	P25021	359 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	GDF1	P27539	372 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	PSMB4	P28070	264 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	HSD17B2	P37059	387 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	RBMX	P38159	391 aa	Known RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	CDK9	P50750	372 aa	Known RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	NAGLU	P54802	743 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	RNF4	P78317	190 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	RCAN2	Q14206	197 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	PRPSAP1	Q14558	356 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	POU6F1	Q14863	301 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	TMED2	Q15363	201 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ELOA3B	Q3SY89	546 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	EIPR1	Q53HC9	387 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	CT47A1	Q5JQC4	288 aa	Predicted RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	MEI1	Q5TIA1	1274 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ADAM5	Q6NVV9	412 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ABHD17C	Q6PCB6	329 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	MFSD7	Q6UXD7	560 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ZNF534	Q76KX8	674 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	MFSD9	Q8NBP5	474 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	ELOA3	Q8NG57	546 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	OR13J1	Q8NGT2	312 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	SMAP2	Q8WU79	429 aa	Predicted RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	PTPMT1	Q8WUK0	201 aa	Predicted RBP	5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	P3H4	Q92791	437 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	PGM2	Q96G03	612 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	PLPPR2	Q96GM1	343 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	GNRHR2	Q96P88	292 aa		5.86	□□□□□ -1.47
DNMT1-222	ENST00000590619	TTC1	Q99614	292 aa		5.86	□□□□□ -1.47

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms