RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 VSIG1Q86XK7 387 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 GCNT2Q8N0V5 402 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 PAQR8Q8TEZ7 354 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 WNT2BQ93097 391 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 ZFATQ9P243 1243 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 CADP27708 2225 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 IQCF5A8MTL0 148 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 H7BY64 318 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 C1QAP02745 245 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 CYP4B1P13584 511 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 POU2F1P14859 743 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 SLC6A12P48065 614 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 BZW1Q7L1Q6 419 aaKnown RBP14.74□□□□□ -0.05
VPS53-218ENST00000575207 FBXO15Q8NCQ5 510 aaPredicted RBP14.74□□□□□ -0.05
VPS53-218ENST00000575207 OR9A1PQ8NGU1 263 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 PRAP1Q96NZ9 151 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 SAE1Q9UBE0 346 aaPredicted RBP14.74□□□□□ -0.05
VPS53-218ENST00000575207 TRHDEQ9UKU6 1024 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 SLC6A5Q9Y345 797 aa14.74□□□□□ -0.05
VPS53-218ENST00000575207 PRR14LQ5THK1 2151 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 LOC100289279A0A1B0GTE1 492 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 A0A1W2PNV4 684 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 C3orf70A6NLC5 250 aaPredicted RBP14.73□□□□□ -0.05
VPS53-218ENST00000575207 PROSCO94903 275 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 HPNP05981 417 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 PSMA3P25788 255 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 GDF1P27539 372 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 FOXN2P32314 431 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 OLR1P78380 273 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 DPCR1Q3MIW9 517 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 DENND5AQ6IQ26 1287 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 SEZ6L2Q6UXD5 910 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 HSDL2Q6YN16 418 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 RFX6Q8HWS3 928 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 LILRB1Q8NHL6 650 aaPredicted RBP14.73□□□□□ -0.05
VPS53-218ENST00000575207 SMAP2Q8WU79 429 aaPredicted RBP14.73□□□□□ -0.05
VPS53-218ENST00000575207 STARD4Q96DR4 205 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 PLPPR2Q96GM1 343 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 PDLIM2Q96JY6 352 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 FOPNLQ96NB1 174 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 SLC39A3Q9BRY0 314 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 FAM129AQ9BZQ8 928 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 GBA3Q9H227 469 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 INTUQ9ULD6 942 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 MYO6Q9UM54 1294 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 IKBKGQ9Y6K9 419 aa14.73□□□□□ -0.05
VPS53-218ENST00000575207 EPPK1P58107 5090 aaKnown RBP14.72□□□□□ -0.05
VPS53-218ENST00000575207 OR51F1A6NGY5 319 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 SMNDC1O75940 238 aaKnown RBP eCLIP14.72□□□□□ -0.05
VPS53-218ENST00000575207 CYP1A2P05177 515 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 MSNP26038 577 aaKnown RBP14.72□□□□□ -0.05
VPS53-218ENST00000575207 NR2C2P49116 596 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 NRF1Q16656 503 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 ZNF791Q3KP31 576 aaPredicted RBP14.72□□□□□ -0.05
VPS53-218ENST00000575207 PRAMEF20Q5VT98 475 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 CLEC2AQ6UVW9 174 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 ASPGQ86U10 573 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 LDB1Q86U70 411 aaPredicted RBP14.72□□□□□ -0.05
VPS53-218ENST00000575207 SLC13A3Q8WWT9 602 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 ABTB1Q969K4 478 aaPredicted RBP14.72□□□□□ -0.05
VPS53-218ENST00000575207 FBXW5Q969U6 566 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 TUBA1CQ9BQE3 449 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 UBQLN3Q9H347 655 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 ARNT2Q9HBZ2 717 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 PNO1Q9NRX1 252 aaKnown RBP14.72□□□□□ -0.05
VPS53-218ENST00000575207 TMEM184CQ9NVA4 438 aa14.72□□□□□ -0.05
VPS53-218ENST00000575207 EPN1Q9Y6I3 576 aaPredicted RBP14.72□□□□□ -0.05
VPS53-218ENST00000575207 DLX3O60479 287 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 SERPINC1P01008 464 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 CPN1P15169 458 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 CDK9P50750 372 aaKnown RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 SKP1P63208 163 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 LSM11P83369 360 aaKnown RBP eCLIP14.71□□□□□ -0.05
VPS53-218ENST00000575207 UBXN1Q04323 297 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 ANKRD20A4Q4UJ75 823 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 ANKRD20A2Q5SQ80 823 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 ANKRD20A1Q5TYW2 823 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 ANKRD20A3Q5VUR7 823 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 NIPAL1Q6NVV3 410 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 SHISA2Q6UWI4 295 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 KRT222Q8N1A0 295 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 OR8K3Q8NH51 312 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 STYXQ8WUJ0 223 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 KAT2AQ92830 837 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 REPS1Q96D71 796 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 MSI2Q96DH6 328 aaKnown RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 C11orf24Q96F05 449 aaPredicted RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 JSRP1Q96MG2 331 aaPredicted RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 ERGIC2Q96RQ1 377 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 TTC1Q99614 292 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 ZNF747Q9BV97 191 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 GRIP2Q9C0E4 1043 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 CLK4Q9HAZ1 481 aaKnown RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 CLCF1Q9UBD9 225 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 FEZ2Q9UHY8 353 aaPredicted RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 WBP11Q9Y2W2 641 aaKnown RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 AAR2Q9Y312 384 aaKnown RBP14.71□□□□□ -0.05
VPS53-218ENST00000575207 MMACHCQ9Y4U1 282 aa14.71□□□□□ -0.05
VPS53-218ENST00000575207 LRRC53A6NM62 1247 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms