RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 PRSS36Q5K4E3 855 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 PRAMEF14Q5SWL7 426 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 PRAMEF13Q5VWM6 474 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 NXPE4Q6UWF7 544 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 TMIGD1Q6UXZ0 262 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ZNF600Q6ZNG1 722 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 DBX2Q6ZNG2 339 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ADGRD2Q7Z7M1 963 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 HEATR4Q86WZ0 1026 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 CELF5Q8N6W0 485 aaKnown RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 TFGQ92734 400 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 MUL1Q969V5 352 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 EXOSC8Q96B26 276 aaKnown RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 REPS1Q96D71 796 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 C7orf34Q96L11 122 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 MAGEB10Q96LZ2 347 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 COQ10AQ96MF6 247 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 VPS35Q96QK1 796 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 NIPSNAP1Q9BPW8 284 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ZCCHC2Q9C0B9 1178 aaKnown RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 IGFLR1Q9H665 355 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 XKR8Q9H6D3 395 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 RAD18Q9NS91 495 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 NDUFAF4Q9P032 175 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ZNF282Q9UDV7 671 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 CDH7Q9ULB5 785 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 SH3PXD2BA1X283 911 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 IGLON5A6NGN9 336 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 GLOD5A6NK44 160 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 PPM1DO15297 605 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 RGS10O43665 173 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 CLPXO76031 633 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 NADKO95544 446 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ALPPL2P10696 532 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 JUNBP17275 347 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 HOXD12P35452 270 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 CCR3P51677 355 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 EPHA5P54756 1037 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 SELENOWP63302 87 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 HTRA4P83105 476 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 MAD2L1BPQ15013 274 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 EXOC3L2Q2M3D2 409 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 FAM78AQ5JUQ0 283 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 GCNT6Q5T4J0 391 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 SLC16A12Q6ZSM3 486 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ZNF557Q8N988 423 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ZNF784Q8NCA9 323 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 ABHD11Q8NFV4 315 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 OR10G2Q8NGC3 310 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 GANCQ8TET4 914 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 SUSD6Q92537 303 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 DNASE1L2Q92874 299 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 UCN3Q969E3 161 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 BORCS5Q969J3 196 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 C11orf24Q96F05 449 aaPredicted RBP8.37□□□□□ -1.07
LINC00558-201ENST00000569422 B3GNT4Q9C0J1 378 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 SLC6A14Q9UN76 642 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 SNX11Q9Y5W9 270 aa8.37□□□□□ -1.07
LINC00558-201ENST00000569422 PCDH17O14917 1159 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 TPST2O60704 377 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 PAK4O96013 591 aaPredicted RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 FURINP09958 794 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 CD6P30203 668 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ITGA1P56199 1179 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 CDK6Q00534 326 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 FAPQ12884 760 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 PPIGQ13427 754 aaKnown RBP eCLIP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 CLCA4Q14CN2 919 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 HNRNPA1L2Q32P51 320 aaKnown RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ZNF829Q3KNS6 432 aaPredicted RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 SPDYE7PQ495Y7 208 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 C1orf53Q5VUE5 145 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 MSANTD1Q6ZTZ1 278 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ADCK1Q86TW2 530 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ENTHD1Q8IYW4 607 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 LGI4Q8N135 537 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 VANGL1Q8TAA9 524 aaPredicted RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 STARD8Q92502 1023 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 FKBP10Q96AY3 582 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 TAMM41Q96BW9 452 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ZNF707Q96C28 371 aaPredicted RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 FCRL1Q96LA6 429 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 HHIPQ96QV1 700 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 EFCAB11Q9BUY7 163 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ALOXE3Q9BYJ1 711 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ZDHHC5Q9C0B5 715 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 ATAD3AQ9NVI7 634 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 TMEM9Q9P0T7 183 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 BTNL2Q9UIR0 455 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 PAIP2BQ9ULR5 123 aaKnown RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 FAM32AQ9Y421 112 aaKnown RBP8.36□□□□□ -1.07
LINC00558-201ENST00000569422 NOTCH4Q99466 2003 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 PRAMEF33A0A0G2JMD5 474 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 PRAMEF10O60809 474 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 LILRB5O75023 590 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 JRKO75564 520 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 S100A6P06703 90 aa8.36□□□□□ -1.07
LINC00558-201ENST00000569422 SRPRAP08240 638 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms