RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	NMBR	P28336	390 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	GRK3	P35626	688 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	CYLC1	P35663	651 aa	Predicted RBP	10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	ADAR	P55265	1226 aa	Known RBP	10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	TNK1	Q13470	666 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	BMPR2	Q13873	1038 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	KRTAP24-1	Q3LI83	254 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	RNF187	Q5TA31	235 aa	Predicted RBP	10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	KIAA0930	Q6ICG6	404 aa	Predicted RBP	10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	HSDL2	Q6YN16	418 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	CYHR1	Q6ZMK1	362 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	MBOAT1	Q6ZNC8	495 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	C17orf64	Q86WR6	236 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	HIPK1	Q86Z02	1210 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	CA13	Q8N1Q1	262 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	LIX1	Q8N485	282 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	GOLM1	Q8NBJ4	401 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	TMEM52	Q8NDY8	209 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	PPHLN1	Q8NEY8	458 aa	Known RBP	10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	OR8K1	Q8NGG5	319 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	GIMAP7	Q8NHV1	300 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	CCDC42	Q96M95	316 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	TRIB1	Q96RU8	372 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	TIMP4	Q99727	224 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	PIGQ	Q9BRB3	760 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	GSX2	Q9BZM3	304 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	FAM129A	Q9BZQ8	928 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	KLHL31	Q9H511	634 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	TREX1	Q9NSU2	369 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	EML6	Q6ZMW3	1958 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	LRRC3C	A6NJW4	275 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	DEFB108A	A8MXU0	73 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	C4orf51	C9J302	202 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232		E5RI56	91 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	ZBTB14	O43829	449 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	TJP3	O95049	919 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	ESR1	P03372	595 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	FPR1	P21462	350 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	ARNT	P27540	789 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	PTPN7	P35236	360 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	OPRM1	P35372	400 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	CLCN7	P51798	805 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	HNRNPF	P52597	415 aa	Known RBP	10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	HADHB	P55084	474 aa	Known RBP	10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	SKP1	P63208	163 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	KCNJ2	P63252	427 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	CRYZ	Q08257	329 aa	Known RBP	10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	FOXF2	Q12947	444 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	DUSP8	Q13202	625 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	PWP1	Q13610	501 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	PRAMEF20	Q5VT98	475 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	NSUN5P2	Q63ZY6	315 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	CES3	Q6UWW8	571 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	UBE2R2	Q712K3	238 aa	Predicted RBP	10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	PRUNE1	Q86TP1	453 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	SCUBE1	Q8IWY4	988 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	LRRC25	Q8N386	305 aa	Predicted RBP	10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	MPP5	Q8N3R9	675 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	PEX13	Q92968	403 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	HSPBAP1	Q96EW2	488 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	PIK3IP1	Q96FE7	263 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	SGCZ	Q96LD1	299 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	JSRP1	Q96MG2	331 aa	Predicted RBP	10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	SPNS1	Q9H2V7	528 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	ZFP64	Q9NPA5	681 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	ACKR4	Q9NPB9	350 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	INTU	Q9ULD6	942 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	CAMK2A	Q9UQM7	478 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	ZNF148	Q9UQR1	794 aa		10.8	□□□□□ -0.68
CLK3-222	ENST00000568232	MEGF8	Q7Z7M0	2845 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	ERI2	A8K979	691 aa	Known RBP	10.79	□□□□□ -0.68
CLK3-222	ENST00000568232		H3BMM5	538 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	AVIL	O75366	819 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	LRAT	O95237	230 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	VAPB	O95292	243 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	NPPB	P16860	134 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	CTNNA1	P35221	906 aa	Known RBP	10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	CPA2	P48052	419 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	SESN2	P58004	480 aa	Predicted RBP	10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	NAE1	Q13564	534 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	PCID2	Q5JVF3	399 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	LIAT1	Q6ZQX7	453 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	PIWIL4	Q7Z3Z4	852 aa	Known RBP	10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	CLNK	Q7Z7G1	428 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	RASGEF1C	Q8N431	466 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	C9orf106	Q8NAJ2	232 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	NT5C	Q8TCD5	201 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	PCBD2	Q9H0N5	130 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	PROK2	Q9HC23	129 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	PRTFDC1	Q9NRG1	225 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	YAE1D1	Q9NRH1	226 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	HOMER3	Q9NSC5	361 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	IFNK	Q9P0W0	207 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	TESMIN	Q9Y4I5	508 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	MMACHC	Q9Y4U1	282 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	WIF1	Q9Y5W5	379 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	NCKAP5	O14513	1909 aa		10.79	□□□□□ -0.68
CLK3-222	ENST00000568232	MBD3L3	A6NE82	208 aa	Predicted RBP	10.78	□□□□□ -0.68
CLK3-222	ENST00000568232		E7EVH7	732 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms