RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CLDN4O14493 209 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 EPPINO95925 133 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 IFNA16P05015 189 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CCL3P10147 92 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 ETS1P14921 441 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 NPPBP16860 134 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 OGNP20774 298 aaKnown RBP6.76□□□□□ -1.33
VPS4A-203ENST00000564399 ENDOUP21128 410 aaKnown RBP6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CCND1P24385 295 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 MGAT1P26572 445 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 ARNTP27540 789 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CEACAM8P31997 349 aaPredicted RBP6.76□□□□□ -1.33
VPS4A-203ENST00000564399 RPL22P35268 128 aaKnown RBP6.76□□□□□ -1.33
VPS4A-203ENST00000564399 PIGAP37287 484 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 TRPC1P48995 793 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 GPR143P51810 404 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 HK2P52789 917 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 KCNJ2P63252 427 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 SORDQ00796 357 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 FOXO1Q12778 655 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 KLF1Q13351 362 aaPredicted RBP6.76□□□□□ -1.33
VPS4A-203ENST00000564399 SIX1Q15475 284 aaPredicted RBP6.76□□□□□ -1.33
VPS4A-203ENST00000564399 HYAL4Q2M3T9 481 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 NEPROQ6NW34 567 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 OPN5Q6U736 354 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CYHR1Q6ZMK1 362 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CENPUQ71F23 418 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 LACC1Q8IV20 430 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 VSTM4Q8IW00 320 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CPNE9Q8IYJ1 553 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 LRRC75A-AS1Q8N1F1 130 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CA13Q8N1Q1 262 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 TMEM132CQ8N3T6 1108 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 UBL4BQ8N7F7 174 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CCDC89Q8N998 374 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 TC2NQ8N9U0 490 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 GOLM1Q8NBJ4 401 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 NT5CQ8TCD5 201 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 PIGTQ969N2 578 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 HSPBAP1Q96EW2 488 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 PERPQ96FX8 193 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 SNF8Q96H20 258 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 GPR21Q99679 349 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 HAUS8Q9BT25 410 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 OR8D2Q9GZM6 311 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 SLC6A15Q9H2J7 730 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 ADAP2Q9NPF8 381 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 PRTFDC1Q9NRG1 225 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 SYBUQ9NX95 663 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 PAK5Q9P286 719 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 ZFP69BQ9UJL9 534 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 AMFRQ9UKV5 643 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 PPIEQ9UNP9 301 aaKnown RBP6.76□□□□□ -1.33
VPS4A-203ENST00000564399 DHRS7Q9Y394 339 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 ATG4BQ9Y4P1 393 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 PCDHGB3Q9Y5G1 929 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CLCA3PQ9Y6N3 262 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 MYOCOSA0A1B0GUC4 107 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PABPN1LA6NDY0 278 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 KDM4EB2RXH2 506 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 AP3B1O00203 1094 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 LIASO43766 372 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 NRDCO43847 1150 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CRLF1O75462 422 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 F7P08709 466 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 HIST1H2AGP0C0S8 130 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 RFPL3SP0C7P2 107 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PAMP19021 973 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 TNNI3P19429 210 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 HIST1H2ADP20671 130 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SAT1P21673 171 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 TIMP3P35625 211 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CYLC1P35663 651 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 AHRP35869 848 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SCTRP47872 440 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF136P52737 540 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 HSD17B7P56937 341 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 BTN3A2P78410 334 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 BASP1P80723 227 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CCZ1BP86790 482 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CCZ1P86791 482 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SNX1Q13596 522 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 THOC5Q13769 683 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CSHL1Q14406 222 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SF3B4Q15427 424 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 ELAVL1Q15717 326 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 ACSF3Q4G176 576 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 TOR1AIP1Q5JTV8 583 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SLC22A10Q63ZE4 541 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF470Q6ECI4 717 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 HMBOX1Q6NT76 420 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PRSS57Q6UWY2 283 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PEX26Q7Z412 305 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CLNKQ7Z7G1 428 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CILP2Q8IUL8 1156 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SCUBE1Q8IWY4 988 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 TRPV3Q8NET8 790 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 ABHD11Q8NFV4 315 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 OR4K1Q8NGD4 311 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 OR5L2Q8NGL0 311 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms