RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 CCDC77Q9BR77 488 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 ACOT9Q9Y305 439 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 ANGPTL3Q9Y5C1 460 aa16.51■□□□□ 0.23
NME3-205ENST00000563854 A0A087X1B8 175 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 K7EPI3 171 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 SAP18O00422 153 aaKnown RBP16.5■□□□□ 0.23
NME3-205ENST00000563854 RTCAO00442 366 aaKnown RBP16.5■□□□□ 0.23
NME3-205ENST00000563854 NME2P1O60361 137 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 SLC19A2O60779 497 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 TGFB1P01137 390 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 GFAPP14136 432 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 NME2P22392 152 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 RCN2Q14257 317 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 MED27Q6P2C8 311 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 ZNF595Q8IYB9 648 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 TMEM156Q8N614 296 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 TEX9Q8N6V9 391 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 APCDD1LQ8NCL9 501 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 ZNF592Q92610 1267 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 VMP1Q96GC9 406 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 GPR137Q96N19 417 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 KCNC2Q96PR1 638 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 MS4A8Q9BY19 250 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 ADAP2Q9NPF8 381 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 SNX15Q9NRS6 342 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 DAPP1Q9UN19 280 aa16.5■□□□□ 0.23
NME3-205ENST00000563854 DIDO1Q9BTC0 2240 aaKnown RBP16.49■□□□□ 0.23
NME3-205ENST00000563854 ARHGAP10A1A4S6 786 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 ASPDHA6ND91 283 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 SYCE1LA8MT33 242 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 PRSS44E7EML9 344 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 ZNF24P17028 368 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 PHBP35232 272 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 CA7P43166 264 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 SSR2P43308 183 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 HLCSP50747 726 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 ID2Q02363 134 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 STX4Q12846 297 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 TBCCQ15814 346 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 FAM83EQ2M2I3 478 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 UBAP2Q5T6F2 1119 aaKnown RBP16.49■□□□□ 0.23
NME3-205ENST00000563854 ZNF793Q6ZN11 406 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 LURAP1LQ8IV03 231 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 CENPLQ8N0S6 344 aaPredicted RBP16.49■□□□□ 0.23
NME3-205ENST00000563854 RNF175Q8N4F7 328 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 CPSF7Q8N684 471 aaKnown RBP16.49■□□□□ 0.23
NME3-205ENST00000563854 ZNF473Q8WTR7 871 aaKnown RBP16.49■□□□□ 0.23
NME3-205ENST00000563854 UBTD2Q8WUN7 234 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 UBE2E3Q969T4 207 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 CCDC120Q96HB5 630 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 ROGDIQ9GZN7 287 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 LIN28AQ9H9Z2 209 aaKnown RBP16.49■□□□□ 0.23
NME3-205ENST00000563854 PRDM7Q9NQW5 492 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 ZDHHC18Q9NUE0 388 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 TINAGQ9UJW2 476 aa16.49■□□□□ 0.23
NME3-205ENST00000563854 ZNF223Q9UK11 482 aaPredicted RBP16.49■□□□□ 0.23
NME3-205ENST00000563854 A0A096LPK6 155 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 CYR61O00622 381 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 ZNHIT1O43257 154 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 ITGA10O75578 1167 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 C2P06681 752 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 ESRRAP11474 423 aaPredicted RBP16.48■□□□□ 0.23
NME3-205ENST00000563854 EPB42P16452 691 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 TNNI3P19429 210 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 RFC3P40938 356 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 RAP1GDS1P52306 607 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 HSF1Q00613 529 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 TERF2Q15554 542 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 C3AR1Q16581 482 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 PFKFB4Q16877 469 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.48■□□□□ 0.23
NME3-205ENST00000563854 AP5B1Q2VPB7 878 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 C16orf47Q6ZP98 133 aaPredicted RBP16.48■□□□□ 0.23
NME3-205ENST00000563854 UBE3DQ7Z6J8 389 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 ZNF227Q86WZ6 799 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 CYP4Z2PQ8N1L4 340 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 SRFBP1Q8NEF9 429 aaKnown RBP16.48■□□□□ 0.23
NME3-205ENST00000563854 MAPKAP1Q9BPZ7 522 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 TBCDQ9BTW9 1192 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 SORBS1Q9BX66 1292 aaKnown RBP16.48■□□□□ 0.23
NME3-205ENST00000563854 VPS11Q9H270 941 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 OR51B5Q9H339 312 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 NINJ2Q9NZG7 142 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 CPSF2Q9P2I0 782 aaKnown RBP16.48■□□□□ 0.23
NME3-205ENST00000563854 MTRF1LQ9UGC7 380 aaKnown RBP16.48■□□□□ 0.23
NME3-205ENST00000563854 CLDN16Q9Y5I7 305 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 CLCA3PQ9Y6N3 262 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 SPACA6W5XKT8 324 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 TEX15Q9BXT5 2789 aa16.48■□□□□ 0.23
NME3-205ENST00000563854 LRRC14BA6NHZ5 514 aa16.47■□□□□ 0.23
NME3-205ENST00000563854 PRKNO60260 465 aaPredicted RBP16.47■□□□□ 0.23
NME3-205ENST00000563854 LDB3O75112 727 aa16.47■□□□□ 0.23
NME3-205ENST00000563854 ZFAND5O76080 213 aa16.47■□□□□ 0.23
NME3-205ENST00000563854 ABOP16442 354 aa16.47■□□□□ 0.23
NME3-205ENST00000563854 CPN2P22792 545 aa16.47■□□□□ 0.23
NME3-205ENST00000563854 ATP5A1P25705 553 aaKnown RBP16.47■□□□□ 0.23
NME3-205ENST00000563854 TYK2P29597 1187 aa16.47■□□□□ 0.23
NME3-205ENST00000563854 TRHRP34981 398 aaPredicted RBP16.47■□□□□ 0.23
NME3-205ENST00000563854 ARL1P40616 181 aaPredicted RBP16.47■□□□□ 0.23
NME3-205ENST00000563854 CASP2P42575 452 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms