RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 TMEM80Q96HE8 168 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 SSR3Q9UNL2 185 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 ANGPT4Q9Y264 503 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 MANSC4A6NHS7 340 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 H3BN98 237 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF8P17098 575 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 RHCEP18577 417 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 BDKRB1P46663 353 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 BRCA2P51587 3418 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 PSPHP78330 225 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF763Q0D2J5 394 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 C2orf80Q0P641 193 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 ELOAQ14241 798 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF630Q2M218 657 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 TXNDC8Q6A555 127 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 GPR65Q8IYL9 337 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 DBF4BQ8NFT6 615 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 SCAMP4Q969E2 229 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 BEX2Q9BXY8 128 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 SRRQ9GZT4 340 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 SLC22A4Q9H015 551 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 B4GALT6Q9UBX8 382 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 TMCC3Q9ULS5 477 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 STUB1Q9UNE7 303 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 SNX7Q9UNH6 387 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 YIPF1Q9Y548 306 aa13.36□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF106Q9H2Y7 1883 aaKnown RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 TMEM202A6NGA9 273 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 NOTOA8MTQ0 251 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 CDRT1O95170 752 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 CYP17A1P05093 508 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 GSTM1P09488 218 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 PIPP12273 146 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 LIMS1P48059 325 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 HMGA2P52926 109 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 NKX3-2P78367 333 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 MADCAM1Q13477 382 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 CRB2Q5IJ48 1285 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 SNAP47Q5SQN1 464 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 UBE2J2Q8N2K1 259 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 UBASH3BQ8TF42 649 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 TRMT61AQ96FX7 289 aaKnown RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 TMEM38AQ9H6F2 299 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 GPBP1L1Q9HC44 474 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 RANGRFQ9HD47 186 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 NUFIP1Q9UHK0 495 aaKnown RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 ATP6V1HQ9UI12 483 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF197O14709 1029 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 LATS1O95835 1130 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 SLC16A8O95907 504 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 IGFBP1P08833 259 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 POLR2EP19388 210 aaKnown RBP13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 CRYBB2P43320 205 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 PREPP48147 710 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 ACLYP53396 1101 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 CRHR2Q13324 411 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 DUSP7Q16829 419 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 PDZK1Q5T2W1 519 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 LIPKQ5VXJ0 399 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 MED27Q6P2C8 311 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 CASP12Q6UXS9 341 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 GDPGP1Q6ZNW5 385 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 SIMC1Q8NDZ2 872 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 ADAMTS19Q8TE59 1207 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 SAMD11Q96NU1 681 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 MND1Q9BWT6 205 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 ABCB9Q9NP78 766 aa13.35□□□□□ -0.27
VPS9D1-202ENST00000561976 TRBV4-1A0A0J9YWV2 114 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF670-ZNF695F2Z2N8 137 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 MYL12BO14950 172 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 TMCC2O75069 709 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 CATP04040 527 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 CHRM5P08912 532 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 SRCP12931 536 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 C1DQ13901 141 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 IER5LQ5T953 404 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 ZDHHC20Q5W0Z9 365 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 COMMD6Q7Z4G1 85 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 BCDIN3DQ7Z5W3 292 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 IFNL1Q8IU54 200 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 GOT1L1Q8NHS2 421 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 TMEM159Q96B96 161 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 CXorf40BQ96DE9 158 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 FYTTD1Q96QD9 318 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 WRAP53Q9BUR4 548 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 UCK2Q9BZX2 261 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 SLC25A19Q9HC21 320 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 TMA7Q9Y2S6 64 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 KCNE2Q9Y6J6 123 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 FABP12A6NFH5 140 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 PRRG1O14668 218 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 OR10H3O60404 316 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 GPR37L1O60883 481 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 AP2A2O94973 939 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 TGFB1P01137 390 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 CSF2P04141 144 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 FHP07954 510 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 PRKAR2AP13861 404 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 NAT1P18440 290 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 314.2 ms