RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ABRAXAS2Q15018 415 aa8.81□□□□□ -1
LDLR-211ENST00000560173 C10orf62Q5T681 223 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 FAM219BQ5XKK7 198 aa8.81□□□□□ -1
LDLR-211ENST00000560173 QSOX2Q6ZRP7 698 aa8.81□□□□□ -1
LDLR-211ENST00000560173 LANCL3Q6ZV70 420 aa8.81□□□□□ -1
LDLR-211ENST00000560173 GPRIN3Q6ZVF9 776 aa8.81□□□□□ -1
LDLR-211ENST00000560173 CHSY3Q70JA7 882 aa8.81□□□□□ -1
LDLR-211ENST00000560173 NDUFAF7Q7L592 441 aa8.81□□□□□ -1
LDLR-211ENST00000560173 MILR1Q7Z6M3 343 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ANKRD37Q7Z713 158 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ACOT4Q8N9L9 421 aa8.81□□□□□ -1
LDLR-211ENST00000560173 PLPP5Q8NEB5 264 aa8.81□□□□□ -1
LDLR-211ENST00000560173 FDCSPQ8NFU4 85 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ADAMTS18Q8TE60 1221 aa8.81□□□□□ -1
LDLR-211ENST00000560173 PPP4R1Q8TF05 950 aa8.81□□□□□ -1
LDLR-211ENST00000560173 METTL21AQ8WXB1 218 aa8.81□□□□□ -1
LDLR-211ENST00000560173 TSLPQ969D9 159 aa8.81□□□□□ -1
LDLR-211ENST00000560173 CCDC126Q96EE4 140 aa8.81□□□□□ -1
LDLR-211ENST00000560173 MAGEB10Q96LZ2 347 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 SERINC2Q96SA4 455 aa8.81□□□□□ -1
LDLR-211ENST00000560173 TBCDQ9BTW9 1192 aa8.81□□□□□ -1
LDLR-211ENST00000560173 SLC25A23Q9BV35 468 aa8.81□□□□□ -1
LDLR-211ENST00000560173 NUDT9Q9BW91 350 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ROGDIQ9GZN7 287 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ZNF700Q9H0M5 742 aa8.81□□□□□ -1
LDLR-211ENST00000560173 GSTO2Q9H4Y5 243 aa8.81□□□□□ -1
LDLR-211ENST00000560173 COPS7BQ9H9Q2 264 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 ZNF160Q9HCG1 818 aa8.81□□□□□ -1
LDLR-211ENST00000560173 PRM3Q9NNZ6 103 aa8.81□□□□□ -1
LDLR-211ENST00000560173 SSU72Q9NP77 194 aaKnown RBP8.81□□□□□ -1
LDLR-211ENST00000560173 ATP13A2Q9NQ11 1180 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ZNF71Q9NQZ8 489 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 RIC8BQ9NVN3 520 aa8.81□□□□□ -1
LDLR-211ENST00000560173 GPR83Q9NYM4 423 aa8.81□□□□□ -1
LDLR-211ENST00000560173 NKIRAS1Q9NYS0 192 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 C19orf25Q9UFG5 118 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 TRPS1Q9UHF7 1281 aa8.81□□□□□ -1
LDLR-211ENST00000560173 PLLPQ9Y342 182 aa8.81□□□□□ -1
LDLR-211ENST00000560173 IGKV3D-11A0A0A0MRZ8 115 aa8.8□□□□□ -1
LDLR-211ENST00000560173 NSG1A0A0A6YYJ2 146 aa8.8□□□□□ -1
LDLR-211ENST00000560173 FAM227AF5H4B4 570 aa8.8□□□□□ -1
LDLR-211ENST00000560173 PLPP1O14494 284 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SEMA3DO95025 777 aa8.8□□□□□ -1
LDLR-211ENST00000560173 MLYCDO95822 493 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SERPINA7P05543 415 aa8.8□□□□□ -1
LDLR-211ENST00000560173 CPA3P15088 417 aa8.8□□□□□ -1
LDLR-211ENST00000560173 HIST1H1TP22492 207 aaPredicted RBP8.8□□□□□ -1
LDLR-211ENST00000560173 ITGA3P26006 1051 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SSR2P43308 183 aa8.8□□□□□ -1
LDLR-211ENST00000560173 TSFMP43897 325 aaKnown RBP8.8□□□□□ -1
LDLR-211ENST00000560173 RAP1GDS1P52306 607 aa8.8□□□□□ -1
LDLR-211ENST00000560173 HNRNPFP52597 415 aaKnown RBP8.8□□□□□ -1
LDLR-211ENST00000560173 ARFIP1P53367 373 aa8.8□□□□□ -1
LDLR-211ENST00000560173 LIM2P55344 173 aa8.8□□□□□ -1
LDLR-211ENST00000560173 PKNOX1P55347 436 aa8.8□□□□□ -1
LDLR-211ENST00000560173 GNGT1P63211 74 aa8.8□□□□□ -1
LDLR-211ENST00000560173 BTG2P78543 158 aa8.8□□□□□ -1
LDLR-211ENST00000560173 NFATC3Q12968 1075 aa8.8□□□□□ -1
LDLR-211ENST00000560173 IFT88Q13099 833 aa8.8□□□□□ -1
LDLR-211ENST00000560173 CUL3Q13618 768 aa8.8□□□□□ -1
LDLR-211ENST00000560173 RAPSNQ13702 412 aa8.8□□□□□ -1
LDLR-211ENST00000560173 NSDHLQ15738 373 aa8.8□□□□□ -1
LDLR-211ENST00000560173 AP5B1Q2VPB7 878 aa8.8□□□□□ -1
LDLR-211ENST00000560173 VWA5B1Q5TIE3 1220 aa8.8□□□□□ -1
LDLR-211ENST00000560173 ASB18Q6ZVZ8 466 aa8.8□□□□□ -1
LDLR-211ENST00000560173 ZNF771Q7L3S4 317 aaPredicted RBP8.8□□□□□ -1
LDLR-211ENST00000560173 CPEB2Q7Z5Q1 589 aaKnown RBP8.8□□□□□ -1
LDLR-211ENST00000560173 SCUBE1Q8IWY4 988 aa8.8□□□□□ -1
LDLR-211ENST00000560173 CCNYL1Q8N7R7 359 aa8.8□□□□□ -1
LDLR-211ENST00000560173 CCDC63Q8NA47 563 aa8.8□□□□□ -1
LDLR-211ENST00000560173 TMEM52Q8NDY8 209 aa8.8□□□□□ -1
LDLR-211ENST00000560173 ARMC2Q8NEN0 867 aa8.8□□□□□ -1
LDLR-211ENST00000560173 RGMAQ96B86 450 aa8.8□□□□□ -1
LDLR-211ENST00000560173 IMMP1LQ96LU5 166 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SMC6Q96SB8 1091 aa8.8□□□□□ -1
LDLR-211ENST00000560173 CSF3RQ99062 836 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SERPINI1Q99574 410 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SMAD5Q99717 465 aaKnown RBP8.8□□□□□ -1
LDLR-211ENST00000560173 WDR77Q9BQA1 342 aaPredicted RBP8.8□□□□□ -1
LDLR-211ENST00000560173 CENPKQ9BS16 269 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SORBS1Q9BX66 1292 aaKnown RBP8.8□□□□□ -1
LDLR-211ENST00000560173 ZNF717Q9BY31 904 aaPredicted RBP8.8□□□□□ -1
LDLR-211ENST00000560173 SLC29A3Q9BZD2 475 aa8.8□□□□□ -1
LDLR-211ENST00000560173 IQCGQ9H095 443 aaKnown RBP8.8□□□□□ -1
LDLR-211ENST00000560173 ELOVL6Q9H5J4 265 aa8.8□□□□□ -1
LDLR-211ENST00000560173 LYRM4Q9HD34 91 aa8.8□□□□□ -1
LDLR-211ENST00000560173 OXSMQ9NWU1 459 aa8.8□□□□□ -1
LDLR-211ENST00000560173 KCMF1Q9P0J7 381 aa8.8□□□□□ -1
LDLR-211ENST00000560173 MID2Q9UJV3 735 aa8.8□□□□□ -1
LDLR-211ENST00000560173 DAPP1Q9UN19 280 aa8.8□□□□□ -1
LDLR-211ENST00000560173 G3BP2Q9UN86 482 aaKnown RBP8.8□□□□□ -1
LDLR-211ENST00000560173 STK38LQ9Y2H1 464 aa8.8□□□□□ -1
LDLR-211ENST00000560173 MMACHCQ9Y4U1 282 aa8.8□□□□□ -1
LDLR-211ENST00000560173 PCDHGB7Q9Y5F8 929 aa8.8□□□□□ -1
LDLR-211ENST00000560173 DOCK10Q96BY6 2186 aa8.8□□□□□ -1
LDLR-211ENST00000560173 SPENQ96T58 3664 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 IGHV3-20A0A0C4DH32 117 aa8.79□□□□□ -1
LDLR-211ENST00000560173 TCRBV16S1A1N1A0A5B0 115 aa8.79□□□□□ -1
LDLR-211ENST00000560173 MANBAO00462 879 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms