RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 Q6ZS92 163 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 SH2D5Q6ZV89 423 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 CHSY3Q70JA7 882 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 SCUBE1Q8IWY4 988 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 ACOT4Q8N9L9 421 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 OR4F6Q8NGB9 312 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 OR2W6PQ8NHA6 318 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 WDR20Q8TBZ3 569 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 MAGEB10Q96LZ2 347 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-219ENST00000555563 TMEM237Q96Q45 408 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 NTMT1Q9BV86 223 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 ERVK-6Q9BXR3 956 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 LYRM4Q9HD34 91 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 PRTFDC1Q9NRG1 225 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 EMCNQ9ULC0 261 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 CLDN16Q9Y5I7 305 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 PPP6CO00743 305 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 CDH16O75309 829 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 GLRA3O75311 464 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 OTCP00480 354 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 ATP5F1P24539 256 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-219ENST00000555563 PPP2R1BP30154 601 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 HSD17B7P56937 341 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 SLC26A5P58743 744 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 SLC13A2Q13183 592 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 AP5B1Q2VPB7 878 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 GGTA1PQ4G0N0 100 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 FAM219BQ5XKK7 198 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 FRG2Q64ET8 278 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 LETMD1Q6P1Q0 360 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 EMBQ6PCB8 327 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 CLNKQ7Z7G1 428 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 CUZD1Q86UP6 607 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF595Q8IYB9 648 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 ARMC2Q8NEN0 867 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 CPT1CQ8TCG5 803 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 MIB2Q96AX9 1013 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 RGMAQ96B86 450 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 CNDP1Q96KN2 507 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 FRG2BQ96QU4 278 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 LMF1Q96S06 567 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 MAPKAP1Q9BPZ7 522 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 CENPKQ9BS16 269 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF717Q9BY31 904 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-219ENST00000555563 MMP25Q9NPA2 562 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 KCMF1Q9P0J7 381 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 MRPS33Q9Y291 106 aaKnown RBP12.86□□□□□ -0.35
SHMT2-219ENST00000555563 PCDHGA10Q9Y5H3 936 aa12.86□□□□□ -0.35
SHMT2-219ENST00000555563 SAGE2PA6NJ88 616 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 A8MUI8 341 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 FOXE1O00358 373 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-219ENST00000555563 CLDN4O14493 209 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 SUPT7LO94864 414 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 F10P00742 488 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 NUDT17P0C025 328 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 PTX3P26022 381 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-219ENST00000555563 TSFMP43897 325 aaKnown RBP12.85□□□□□ -0.35
SHMT2-219ENST00000555563 PRKAA2P54646 552 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 ARG2P78540 354 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 CLCQ05315 142 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF33BQ06732 778 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 CUL3Q13618 768 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 RCN2Q14257 317 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 INPP5JQ15735 1006 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-219ENST00000555563 ERCC6LQ2NKX8 1250 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 UNC50Q53HI1 259 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF678Q5SXM1 525 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 ABHD17BQ5VST6 288 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 FCRLBQ6BAA4 426 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 TTC19Q6DKK2 380 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-219ENST00000555563 OR4C11Q6IEV9 310 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 MILR1Q7Z6M3 343 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 IQCKQ8N0W5 287 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 KIF2BQ8N4N8 673 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 DNAJB14Q8TBM8 379 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 M1APQ8TC57 530 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 TRPC4APQ8TEL6 797 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 CAVIN3Q969G5 261 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 MTFMTQ96DP5 389 aaKnown RBP12.85□□□□□ -0.35
SHMT2-219ENST00000555563 KCNK13Q9HB14 408 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 PLA2G3Q9NZ20 509 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 DCDC2Q9UHG0 476 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 FBXW2Q9UKT8 454 aa12.85□□□□□ -0.35
SHMT2-219ENST00000555563 A0A0A6YYD5 115 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 DYTNA2CJ06 578 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 A8MUA0 341 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 MAN1A2O60476 641 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 EEDO75530 441 aaKnown RBP12.84□□□□□ -0.35
SHMT2-219ENST00000555563 WDPCPO95876 746 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 PROCP04070 461 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 CPN2P22792 545 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 BSGP35613 385 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 ARFIP1P53367 373 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 HNRNPH2P55795 449 aaKnown RBP12.84□□□□□ -0.35
SHMT2-219ENST00000555563 IFT88Q13099 833 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 SLAMF1Q13291 335 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF169Q14929 603 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-219ENST00000555563 TLR1Q15399 786 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 SGO1Q5FBB7 561 aa12.84□□□□□ -0.35
SHMT2-219ENST00000555563 C10orf62Q5T681 223 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms