RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 ZNF701M0R085 212 aaPredicted RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ADAMDEC1O15204 470 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SLC16A6O15403 523 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 PSIP1O75475 530 aaKnown RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 IFNW1P05000 195 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 NR2F1P10589 423 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ITIH1P19827 911 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SOX3P41225 446 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SSR2P43308 183 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 PNLIPRP1P54315 467 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TPTEP56180 551 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TARDBPQ13148 414 aaKnown RBP eCLIP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TAB1Q15750 504 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TSPYL5Q86VY4 417 aaPredicted RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 AMER3Q8N944 861 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF675Q8TD23 568 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TIFAQ96CG3 184 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF347Q96SE7 839 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CXorf36Q9H7Y0 433 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SEMA3GQ9NS98 782 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 EXO1Q9UQ84 846 aaKnown RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 PLEKHM1Q9Y4G2 1056 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 NOTCH4Q99466 2003 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 IGLV3-16A0A075B6K0 115 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 TFECO14948 347 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 SLC31A1O15431 190 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 NTN1O95631 604 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 CYP17A1P05093 508 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 SERPINB1P30740 379 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 MMP12P39900 470 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ITGA1P56199 1179 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ZDHHC20Q5W0Z9 365 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 AMZ2Q86W34 360 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 TRUB1Q8WWH5 349 aaKnown RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 NACC2Q96BF6 587 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 GPN2Q9H9Y4 310 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 DNMT3AQ9Y6K1 912 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ANAPC1Q9H1A4 1944 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 COL4A6Q14031 1691 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 TRBV4-1A0A0J9YWV2 114 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 GASTP01350 101 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 OR12D1P0DN82 309 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 HOXB3P14651 431 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 RYKP34925 604 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 MRPL19P49406 292 aaKnown RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 PRLHRP49683 370 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 DSTNP60981 165 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 GRSF1Q12849 480 aaKnown RBP eCLIP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 MPEG1Q2M385 716 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 GGTA1PQ4G0N0 100 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 PSRC1Q6PGN9 363 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 FAM83FQ8NEG4 500 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 OR8D1Q8WZ84 308 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 GGHQ92820 318 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF689Q96CS4 500 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 C12orf66Q96MD2 445 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 DOK1Q99704 481 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ITPAQ9BY32 194 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 NUAK2Q9H093 628 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 RHBGQ9H310 441 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 GPSM3Q9Y4H4 160 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 SCN8AQ9UQD0 1980 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 GCM2O75603 506 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 CCNB2O95067 398 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 PTGES3Q15185 160 aaKnown RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 CCDC85BQ15834 202 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 C2orf27AQ580R0 203 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ANKRD13BQ86YJ7 626 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 SYNPOQ8N3V7 929 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 HORMAD2Q8N7B1 307 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 B3GNT7Q8NFL0 401 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 VOPP1Q96AW1 172 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 REPS1Q96D71 796 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 C7orf34Q96L11 122 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF300Q96RE9 604 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ZCCHC2Q9C0B9 1178 aaKnown RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 SLC6A17Q9H1V8 727 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ERVK13-1Q9NX77 482 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 TEX10Q9NXF1 929 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 TBC1D14Q9P2M4 693 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 PAIP2BQ9ULR5 123 aaKnown RBP13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 ANGPT4Q9Y264 503 aa13.05□□□□□ -0.32
PRPF40B-209ENST00000548825 PLXNA4Q9HCM2 1894 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 SLC5A10A0PJK1 596 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 A8MV72 311 aaPredicted RBP13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 SLC22A1O15245 554 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 LRRTM2O43300 516 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 JRKO75564 520 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF12P17014 697 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 GRK5P34947 590 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 GRK3P35626 688 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 ELP6Q0PNE2 266 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 MTAPQ13126 283 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 LASP1Q14847 261 aaKnown RBP13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 SYPL1Q16563 259 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 TMEM31Q5JXX7 168 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 NXPE4Q6UWF7 544 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF547Q8IVP9 402 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 TCEANCQ8N8B7 351 aa13.04□□□□□ -0.32
PRPF40B-209ENST00000548825 ZFP41Q8N8Y5 198 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms