RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 OR52N2Q8NGI0 321 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 OR5M9Q8NGP3 310 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 FAM71BQ8TC56 605 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 BLOC1S5Q8TDH9 187 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 SARAFQ96BY9 339 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 PERPQ96FX8 193 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 NUDT11Q96G61 164 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 C10orf90Q96M02 699 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 CYTH2Q99418 400 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 NPAS2Q99743 824 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 NRTNQ99748 197 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 SH3GL2Q99962 352 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 C19orf43Q9BQ61 176 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 FICDQ9BVA6 458 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 C19orf24Q9BVV8 132 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 VN1R1Q9GZP7 353 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 DRC3Q9H069 523 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 CDCP1Q9H5V8 836 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 UTP6Q9NYH9 597 aaKnown RBP3.8□□□□□ -1.8
SNHG1-220ENST00000544550 ZNF629Q9UEG4 869 aaPredicted RBP3.8□□□□□ -1.8
SNHG1-220ENST00000544550 FAM153AQ9UHL3 310 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 CDC42EP3Q9UKI2 254 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 ACAD8Q9UKU7 415 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 SLC39A10Q9ULF5 831 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 KLHL20Q9Y2M5 609 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 VWA7Q9Y334 891 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 PCDHGB3Q9Y5G1 929 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 FAM215AQ9Y5M1 114 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 MYO7BQ6PIF6 2116 aa3.8□□□□□ -1.8
SNHG1-220ENST00000544550 FBN1P35555 2871 aaKnown RBP3.8□□□□□ -1.8
SNHG1-220ENST00000544550 FN1P02751 2386 aaKnown RBP3.8□□□□□ -1.8
SNHG1-220ENST00000544550 IGLV3-16A0A075B6K0 115 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 IGHV3-20A0A0C4DH32 117 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 A0A0J9YVX5 310 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 A0A0U1RQJ8 604 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 A0A1B0GVC2 190 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 A0A1W2PR48 441 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 MBD3L4A6NDZ8 208 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 C5orf60A6NFR6 353 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 MBD3L5A6NJ08 208 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TMCO5BA8MYB1 307 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 H0YIG0 161 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 CD5LO43866 347 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 CTSVO60911 334 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TMEM127O75204 238 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 LY86O95711 162 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 IGHG3P01860 377 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TUBB4AP04350 444 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 GZMAP12544 262 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PKMP14618 531 aaKnown RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 FERP16591 822 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TPH1P17752 444 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 IL10P22301 178 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ACRV1P26436 265 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 EEF1GP26641 437 aaKnown RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ACADLP28330 430 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 GNALP38405 381 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 BUD31P41223 144 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 MAN2A2P49641 1150 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SLC16A1P53985 500 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 WNT3AP56704 352 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SLC26A5P58743 744 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PPIAP62937 165 aaKnown RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 MEF2AQ02078 507 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PLGLB1Q02325 96 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SLC25A11Q02978 314 aaKnown RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 GBE1Q04446 702 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 CD69Q07108 199 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 MGAT5Q09328 741 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 FAM53BQ14153 422 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 DPYSL3Q14195 570 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 USP10Q14694 798 aaKnown RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PDK1Q15118 436 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SF3B4Q15427 424 aaKnown RBP eCLIP3.79□□□□□ -1.84e-47■■■■■ 46.5
SNHG1-220ENST00000544550 TAF1AQ15573 450 aaPredicted RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SLC1A5Q15758 541 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ACKR1Q16570 336 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PRTGQ2VWP7 1150 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 KRTAP24-1Q3LI83 254 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 CCDC38Q502W7 563 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TEX44Q53QW1 395 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SIRPB2Q5JXA9 342 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 KCTD11Q693B1 232 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 RTL6Q6ICC9 239 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 FRMPD2BQ6IN97 320 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TTC23LQ6PF05 361 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PAPD4Q6PIY7 484 aaKnown RBP3.79□□□□□ -1.8
SNHG1-220ENST00000544550 LANCL3Q6ZV70 420 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SNX20Q7Z614 316 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PCGF5Q86SE9 256 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 DCUN1D3Q8IWE4 304 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 REXO1L1PQ8IX06 675 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 GPALPP1Q8IXQ4 340 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 ULK2Q8IYT8 1036 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 FBXW8Q8N3Y1 598 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 SLC25A41Q8N5S1 370 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 TMEM156Q8N614 296 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 CSNK1A1LQ8N752 337 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 PPM1NQ8N819 430 aa3.79□□□□□ -1.8
SNHG1-220ENST00000544550 NIPA2Q8N8Q9 360 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms