RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 TIMP1P01033 207 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 GH1P01241 217 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SLC4A1P02730 911 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 LGALS2P05162 132 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 VIMP08670 466 aaKnown RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 FAM86B2P0C5J1 330 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PLA2G4BP0C869 781 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 ZNF286BP0CG31 522 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 GHRP10912 638 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 VPREB1P12018 145 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 MMP9P14780 707 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 EZRP15311 586 aaKnown RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 GNB3P16520 340 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 GAP43P17677 238 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 IL10P22301 178 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PTAFRP25105 342 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PSMA5P28066 241 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 EPHA2P29317 976 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 CCND2P30279 289 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 TLX1P31314 330 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 GCKP35557 465 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 CD86P42081 329 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 THOP1P52888 689 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 MFAP4P55083 255 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 HSD17B7P56937 341 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 UBASH3AP57075 661 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SIRPAP78324 504 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 IL1RL1Q01638 556 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 IFT88Q13099 833 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 ITGB3BPQ13352 177 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 IRF3Q14653 427 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 MELKQ14680 651 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 NR1D2Q14995 579 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PPA1Q15181 289 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SHHQ15465 462 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SNCBQ16143 134 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 KIAA1644Q3SXP7 199 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 LRIT3Q3SXY7 679 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 KRBOX4Q5JUW0 171 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 LCE3CQ5T5A8 94 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 CST9LP1Q5W188 147 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 FAM53AQ6NSI3 398 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 UNC5DQ6UXZ4 953 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 DENND5BQ6ZUT9 1274 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 INTS8Q75QN2 995 aaKnown RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 NUP54Q7Z3B4 507 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 NOTCH2NLQ7Z3S9 236 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PIWIL3Q7Z3Z3 882 aaKnown RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 ISCA2Q86U28 154 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 TDHQ8IZJ6 230 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 LRRC43Q8N309 656 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 ADAD2Q8NCV1 583 aaKnown RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 PPTC7Q8NI37 304 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PSMA8Q8TAA3 256 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 IRGQQ8WZA9 623 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SEMA4DQ92854 862 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PTP4A1Q93096 173 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SLC22A18Q96BI1 424 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SPDL1Q96EA4 605 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SAT2Q96F10 170 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 SENP5Q96HI0 755 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 SGK494Q96LW2 274 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 RMDN2Q96LZ7 410 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 CCDC114Q96M63 670 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 ZNF582Q96NG8 517 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 GCNAQ96QF7 691 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SRSF8Q9BRL6 282 aaKnown RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 MTG1Q9BT17 334 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 NUP58Q9BVL2 599 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 KLHL4Q9C0H6 718 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 TRPV6Q9H1D0 765 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 C1orf21Q9H246 121 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 GOLPH3LQ9H4A5 285 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SLA2Q9H6Q3 261 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 PSTPIP2Q9H939 334 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SCRT2Q9NQ03 307 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 DCAF16Q9NXF7 216 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 QPCTLQ9NXS2 382 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 WSB2Q9NYS7 404 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 SPATA7Q9P0W8 599 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 VPS54Q9P1Q0 977 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 TBK1Q9UHD2 729 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 SH3BGRL2Q9UJC5 107 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 TMCO1Q9UM00 188 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 HPCAL4Q9UM19 191 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 C15orf41Q9Y2V0 281 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 NME7Q9Y5B8 376 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 POMT1Q9Y6A1 747 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 KIF26AQ9ULI4 1882 aaPredicted RBP3.13□□□□□ -1.91
USP48-215ENST00000534705 NFASCO94856 1347 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 MROH7Q68CQ1 1323 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 STK36Q9NRP7 1315 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 TRIOO75962 3097 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 ANAPC1Q9H1A4 1944 aa3.13□□□□□ -1.91
USP48-215ENST00000534705 MUC3AQ02505 3323 aa3.12□□□□□ -1.91
USP48-215ENST00000534705 TRAV34A0A0B4J273 112 aa3.12□□□□□ -1.91
USP48-215ENST00000534705 TRBC2A0A5B9 178 aa3.12□□□□□ -1.91
USP48-215ENST00000534705 ELOVL7A1L3X0 281 aa3.12□□□□□ -1.91
USP48-215ENST00000534705 CTDSP2O14595 271 aa3.12□□□□□ -1.91
USP48-215ENST00000534705 PGRMC2O15173 223 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms