RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TRMT61BQ9BVS5 477 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TNFRSF10DQ9UBN6 386 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 IFT52Q9Y366 437 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ASB1Q9Y576 335 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ENPP4Q9Y6X5 453 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 EVPLQ92817 2033 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 UBE2QL1A1L167 161 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 URADA6NGE7 173 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 RIIAD1A6NNX1 92 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TPD52L2O43399 206 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 FGF19O95750 216 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ITGBL1O95965 494 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 PCGF2P35227 344 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 LGALS3BPQ08380 585 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 EIF4HQ15056 248 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TRIM71Q2Q1W2 868 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CTU2Q2VPK5 515 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 UAP1L1Q3KQV9 507 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 MFSD4BQ5TF39 518 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 HMGCLL1Q8TB92 370 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 SGCDQ92629 289 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TFGQ92734 400 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 GGHQ92820 318 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CXorf40BQ96DE9 158 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ELOVL2Q9NXB9 296 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 IL37Q9NZH6 218 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 BTNL2Q9UIR0 455 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 UTS2RQ9UKP6 389 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CPSF4LA6NMK7 179 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 AOC2O75106 756 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 LEFTY1O75610 366 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 SOD2P04179 222 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 HMGN1P05114 100 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CD70P32970 193 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 IDUAP35475 653 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TBPL1P62380 186 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TBCEQ15813 527 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 AGAP7PQ5VUJ5 663 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ANKRD34AQ69YU3 496 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 DHRS4L2Q6PKH6 230 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TRIM46Q7Z4K8 759 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 PARP16Q8N5Y8 322 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ZNF433Q8N7K0 673 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 B3GNT7Q8NFL0 401 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ING5Q8WYH8 240 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 OR5P2Q8WZ92 322 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 DNASE1L2Q92874 299 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 GLYATL1Q969I3 302 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 MBOAT4Q96T53 435 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 RACGAP1Q9H0H5 632 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 PHPT1Q9NRX4 125 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 STUB1Q9UNE7 303 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CORINQ9Y5Q5 1042 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 GSAPA4D1B5 854 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 GABRR3A8MPY1 467 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 A8MU76 341 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 OR10H2O60403 315 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 SLC16A8O95907 504 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 STATHP02808 62 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 NUDT7P0C024 238 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 RCVRNP35243 200 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 ARL4DP49703 201 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 RGS6P49758 472 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 HNRNPFP52597 415 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 DCDC1P59894 354 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 PPP2R2BQ00005 443 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 PCDH1Q08174 1060 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 MAB21L1Q13394 359 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 SLC36A4Q6YBV0 504 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 RNF44Q7L0R7 432 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 FAM220AQ7Z4H9 259 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 RIMKLAQ8IXN7 391 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 TRAM1L1Q8N609 369 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 MEIOBQ8N635 442 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 SLC37A3Q8NCC5 494 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 OR7G3Q8NG95 312 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 C12orf66Q96MD2 445 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 P2RY13Q9BPV8 354 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 LMAN2LQ9H0V9 348 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 TMEM27Q9HBJ8 222 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 HSPB11Q9Y547 144 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 TAPBPO15533 448 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 LATS1O95835 1130 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 INHAP05111 366 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 EPHX1P07099 455 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 CYBAP13498 195 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 TYRP14679 529 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 CSNK2A2P19784 350 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 CD9P21926 228 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 IDSP22304 550 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 CPN2P22792 545 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 ACSL1P33121 698 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 CTNNB1P35222 781 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 CLK3P49761 638 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 SYT6Q5T7P8 510 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 GRHL2Q6ISB3 625 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 COMMD6Q7Z4G1 85 aa8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 RANBP3LQ86VV4 465 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-216ENST00000512820 CHPFQ8IZ52 775 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms