RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TMEM125Q96AQ2 219 aa7.98□□□□□ -1.13
USP54-215ENST00000497106 GTPBP2Q9BX10 602 aaKnown RBP7.98□□□□□ -1.13
USP54-215ENST00000497106 STRADBQ9C0K7 418 aa7.98□□□□□ -1.13
USP54-215ENST00000497106 ING2Q9H160 280 aa7.98□□□□□ -1.13
USP54-215ENST00000497106 EVA1AQ9H8M9 152 aa7.98□□□□□ -1.13
USP54-215ENST00000497106 IL21RQ9HBE5 538 aa7.98□□□□□ -1.13
USP54-215ENST00000497106 SLC35C2Q9NQQ7 365 aa7.98□□□□□ -1.13
USP54-215ENST00000497106 ZCCHC3Q9NUD5 404 aaKnown RBP7.98□□□□□ -1.13
USP54-215ENST00000497106 IFT80Q9P2H3 777 aaPredicted RBP7.98□□□□□ -1.13
USP54-215ENST00000497106 KLHL3Q9UH77 587 aa7.98□□□□□ -1.13
USP54-215ENST00000497106 CSTF2P33240 577 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP54-215ENST00000497106 CCT3P49368 545 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 GPAT3Q53EU6 434 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 C6orf132Q5T0Z8 1188 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 CAMKMTQ7Z624 323 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 MCATQ8IVS2 390 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP54-215ENST00000497106 FAM160A2Q8N612 972 aaPredicted RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 ACOT4Q8N9L9 421 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 OR7A2PQ8NGA2 310 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 BBS10Q8TAM1 723 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 BAHD1Q8TBE0 780 aaPredicted RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 PRRG3Q9BZD7 231 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 HHATLQ9HCP6 504 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 LYRM4Q9HD34 91 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 TNFRSF12AQ9NP84 129 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 NLGN3Q9NZ94 848 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 ZNF225Q9UK10 706 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PNMA8BQ9ULN7 279 aaPredicted RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 LIPT1Q9Y234 373 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 C15orf41Q9Y2V0 281 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 ANKRD36A6QL64 1941 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 C19orf67A6NJJ6 358 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 TPST1O60507 370 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PIAS2O75928 621 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 FABP3P05413 133 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 MAOBP27338 520 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 FASLGP48023 281 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PRKAG1P54619 331 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PSMD4P55036 377 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 OCA2Q04671 838 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 CEACAM7Q14002 265 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 VEZF1Q14119 521 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 IFI44LQ53G44 452 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 NDUFAF5Q5TEU4 345 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 CPZQ66K79 652 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 FAM71E1Q6IPT2 247 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PLD3Q8IV08 490 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 APLFQ8IW19 511 aaPredicted RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 PIK3C3Q8NEB9 887 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 OR4K1Q8NGD4 311 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 METTL21AQ8WXB1 218 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 TPD52L3Q96J77 140 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 DGAT2Q96PD7 388 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 DDX31Q9H8H2 851 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 ABCD2Q9UBJ2 740 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 POMT2Q9UKY4 750 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 MAP4K5Q9Y4K4 846 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 V9GYQ6 96 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 A8MUI8 341 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 YY2O15391 372 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PEX1O43933 1283 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 ALOX5P09917 674 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 GGT1P19440 569 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 BCL6P41182 706 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 MAZP56270 477 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 PAQR7Q86WK9 346 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 DTWD2Q8NBA8 298 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 GTF2H4Q92759 462 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 SLC45A3Q96JT2 553 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 BTBD9Q96Q07 612 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 TEFMQ96QE5 360 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 DNAJB9Q9UBS3 223 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 RAPGEFL1Q9UHV5 662 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PACSIN3Q9UKS6 424 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 FBP2O00757 339 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 CASQ2O14958 399 aaPredicted RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 ADAMDEC1O15204 470 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 RETP07949 1114 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 C7P10643 843 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 LAMP1P11279 417 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 ATP5A1P25705 553 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 SERTAD2Q14140 314 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 LARS2Q15031 903 aaKnown RBP7.97□□□□□ -1.13
USP54-215ENST00000497106 ADRM1Q16186 407 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 VMACQ2NL98 169 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 TBC1D25Q3MII6 688 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 LRIF1Q5T3J3 769 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 ABHD17CQ6PCB6 329 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 SETD9Q8NE22 299 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 DTNBP1Q96EV8 351 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 FCRL1Q96LA6 429 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 OSBPL11Q9BXB4 747 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 BATF3Q9NR55 127 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 PCDHA9Q9Y5H5 950 aa7.97□□□□□ -1.13
USP54-215ENST00000497106 FOXD2O60548 495 aaPredicted RBP7.96□□□□□ -1.13
USP54-215ENST00000497106 SDC3O75056 442 aa7.96□□□□□ -1.13
USP54-215ENST00000497106 CREG1O75629 220 aa7.96□□□□□ -1.13
USP54-215ENST00000497106 CST1P01037 141 aa7.96□□□□□ -1.13
USP54-215ENST00000497106 CD63P08962 238 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms