RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 PCDH1Q08174 1060 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 STX4Q12846 297 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 E2F2Q14209 437 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 AP5B1Q2VPB7 878 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 TMEM35AQ53FP2 167 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 MROH9Q5TGP6 573 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 SP5Q6BEB4 398 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-214ENST00000496043 C8orf74Q6P047 294 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 MED27Q6P2C8 311 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 CEP128Q6ZU80 1094 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 LAS2Q8IYD9 372 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 ARMC10Q8N2F6 343 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 FAM47BQ8NA70 645 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 APCDD1LQ8NCL9 501 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 TMEM52Q8NDY8 209 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 C7orf57Q8NEG2 295 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 RHEBL1Q8TAI7 183 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 MRRFQ96E11 262 aaKnown RBP11.9□□□□□ -0.5
PTPRF-214ENST00000496043 VMP1Q96GC9 406 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 GPR137Q96N19 417 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 KCNC2Q96PR1 638 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 ALOXE3Q9BYJ1 711 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 LYRM4Q9HD34 91 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 KCMF1Q9P0J7 381 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 ADGRE2Q9UHX3 823 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 NPIPA1Q9UND3 350 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 PPIEQ9UNP9 301 aaKnown RBP11.9□□□□□ -0.5
PTPRF-214ENST00000496043 ANGPTL3Q9Y5C1 460 aa11.9□□□□□ -0.5
PTPRF-214ENST00000496043 ESYT3A0FGR9 886 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ASNA1O43681 348 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 NME2P1O60361 137 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 TGFB1P01137 390 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 C2P06681 752 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 PCNAP12004 261 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 TNNI3P19429 210 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 NME2P22392 152 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ATP5A1P25705 553 aaKnown RBP11.89□□□□□ -0.51
PTPRF-214ENST00000496043 CERS1P27544 350 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 SERPINB1P30740 379 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 GPR143P51810 404 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 HNRNPFP52597 415 aaKnown RBP11.89□□□□□ -0.51
PTPRF-214ENST00000496043 BMPR2Q13873 1038 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ACAP2Q15057 778 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 DEPDC1Q5TB30 811 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ADNP2Q6IQ32 1131 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 UBE3DQ7Z6J8 389 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 SPPL2CQ8IUH8 684 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 TMEM156Q8N614 296 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 TEX9Q8N6V9 391 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ACOT4Q8N9L9 421 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 OR7G3Q8NG95 312 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ZNF473Q8WTR7 871 aaKnown RBP11.89□□□□□ -0.51
PTPRF-214ENST00000496043 UBTD2Q8WUN7 234 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 KCTD4Q8WVF5 259 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 DAZLQ92904 295 aaKnown RBP11.89□□□□□ -0.51
PTPRF-214ENST00000496043 NCLNQ969V3 563 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 CMTM7Q96FZ5 175 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 FRMD6Q96NE9 622 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 TSPYL1Q9H0U9 437 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ADAP2Q9NPF8 381 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ZDHHC18Q9NUE0 388 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 VTI1BQ9UEU0 232 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 YARS2Q9Y2Z4 477 aaKnown RBP11.89□□□□□ -0.51
PTPRF-214ENST00000496043 ASB1Q9Y576 335 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 CLDN16Q9Y5I7 305 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 CLCA3PQ9Y6N3 262 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 SPACA6W5XKT8 324 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 DOPEY1Q5JWR5 2465 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 CPAMD8Q8IZJ3 1885 aa11.89□□□□□ -0.51
PTPRF-214ENST00000496043 KLRC4-KLRK1H3BQV0 150 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 TGFBR3LH3BV60 316 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 SLC19A2O60779 497 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 ITGA10O75578 1167 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 ESRRAP11474 423 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-214ENST00000496043 MTHFD2P13995 350 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 GFAPP14136 432 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 TYK2P29597 1187 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 PPP2R1BP30154 601 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 ART3Q13508 389 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 SERTAD2Q14140 314 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 ELAVL1Q15717 326 aaKnown RBP11.88□□□□□ -0.51
PTPRF-214ENST00000496043 UAP1Q16222 522 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-214ENST00000496043 PFKFB4Q16877 469 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 WHAMMP3Q1A5X7 153 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 LIPJQ5W064 366 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 OR4C11Q6IEV9 310 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 GRHL2Q6ISB3 625 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 KLC3Q6P597 504 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 CLNKQ7Z7G1 428 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 ZNF227Q86WZ6 799 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 POGLUT1Q8NBL1 392 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 MORN4Q8NDC4 146 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 RGMAQ96B86 450 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 MAGED4Q96JG8 741 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 MAPKAP1Q9BPZ7 522 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 CENPKQ9BS16 269 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 MS4A8Q9BY19 250 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 MTRF1LQ9UGC7 380 aaKnown RBP11.88□□□□□ -0.51
PTPRF-214ENST00000496043 SH3BGRL2Q9UJC5 107 aa11.88□□□□□ -0.51
PTPRF-214ENST00000496043 ZNF835Q9Y2P0 537 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms