RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	PDAP1	Q13442	181 aa	Known RBP	12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	PPP1R3A	Q16821	1122 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	MSS51	Q4VC12	460 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	ARSK	Q6UWY0	536 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	B3GNT6	Q6ZMB0	384 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	SLC22A16	Q86VW1	577 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	IGDCC3	Q8IVU1	814 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	GPATCH11	Q8N954	259 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	PTPMT1	Q8WUK0	201 aa	Predicted RBP	12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	ATL1	Q8WXF7	558 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	MS4A6E	Q96DS6	147 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	QRFPR	Q96P65	431 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	CSF3R	Q99062	836 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	AIF1L	Q9BQI0	150 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	CCDC77	Q9BR77	488 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	TRIM54	Q9BYV2	358 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	DLL4	Q9NR61	685 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	PLEKHA6	Q9Y2H5	1048 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	HRNR	Q86YZ3	2850 aa	Predicted RBP	12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	EML6	Q6ZMW3	1958 aa		12.69	□□□□□ -0.38
SAMM50-204	ENST00000493161	NAV3	Q8IVL0	2385 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ATP6AP2	A0A1C7CYW4	349 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	OR14I1	A6ND48	311 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ACOT7	O00154	380 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	CDC7	O00311	574 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	CYR61	O00622	381 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	BCKDK	O14874	412 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ERI3	O43414	337 aa	Known RBP	12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	PROM1	O43490	865 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ATP6AP2	O75787	350 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	TBX6	O95947	436 aa	Predicted RBP	12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ENDOU	P21128	410 aa	Known RBP	12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	CNR1	P21554	472 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	GDF5	P43026	501 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	HK2	P52789	917 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	HSD17B7	P56937	341 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	RAB38	P57729	211 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	BMPR2	Q13873	1038 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ADNP2	Q6IQ32	1131 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	RGS9BP	Q6ZS82	235 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	CNTN4	Q8IWV2	1026 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	GPALPP1	Q8IXQ4	340 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	KLHDC8A	Q8IYD2	350 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	CHDH	Q8NE62	594 aa	Predicted RBP	12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	NINJ1	Q92982	152 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	GAL3ST3	Q96A11	431 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	FAR2	Q96K12	515 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	FAM173A	Q9BQD7	235 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ADAP2	Q9NPF8	381 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	TRMT1	Q9NXH9	659 aa	Known RBP	12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ALKBH4	Q9NXW9	302 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	TUBA8	Q9NY65	449 aa	Predicted RBP	12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	CRIM1	Q9NZV1	1036 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	ACAD8	Q9UKU7	415 aa		12.68	□□□□□ -0.38
SAMM50-204	ENST00000493161	LRIT2	A6NDA9	550 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	PABPN1L	A6NDY0	278 aa	Known RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	NPEPPSL1	A6NEC2	478 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	FIGNL2	A6NMB9	653 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	IFNA16	P05015	189 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	ENO2	P09104	434 aa	Predicted RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	CCL3	P10147	92 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	CERS1	P27544	350 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	PLA2G16	P53816	162 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	PPP2R2A	P63151	447 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	C1orf185	Q5T7R7	199 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	TEDDM1	Q5T9Z0	273 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	RNASEH2B	Q5TBB1	312 aa	Known RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	NDUFAF5	Q5TEU4	345 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	CCDC137	Q6PK04	289 aa	Known RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	HSDL2	Q6YN16	418 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	SLCO4C1	Q6ZQN7	724 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	RTL4	Q6ZR62	310 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	VN1R5	Q7Z5H4	357 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	WDR53	Q7Z5U6	358 aa	Predicted RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	PPIL6	Q8IXY8	311 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	FAM109A	Q8N4B1	249 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	CCT6B	Q92526	530 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	OR8D2	Q9GZM6	311 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	CLEC4M	Q9H2X3	399 aa	Predicted RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	IL1RL2	Q9HB29	575 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	RASSF1	Q9NS23	344 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	SPRR3	Q9UBC9	169 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	RPH3A	Q9Y2J0	694 aa	Predicted RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	VWA7	Q9Y334	891 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	CLCA3P	Q9Y6N3	262 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	DNAJC13	O75165	2243 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	ANKHD1	Q8IWZ3	2542 aa	Known RBP	12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	AKAP6	Q13023	2319 aa		12.67	□□□□□ -0.38
SAMM50-204	ENST00000493161	KDM4E	B2RXH2	506 aa	Predicted RBP	12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	CLDN4	O14493	209 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	AQP7	O14520	342 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	PRAMEF4	O60810	478 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	C1GALT1C1L	P0DN25	315 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	CDC25B	P30305	580 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	PIGA	P37287	484 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	KIR2DL3	P43628	341 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	MAN2A2	P49641	1150 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	LIM2	P55344	173 aa		12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	STXBP1	P61764	594 aa	Known RBP	12.66	□□□□□ -0.38
SAMM50-204	ENST00000493161	SLBP	Q14493	270 aa	Known RBP eCLIP	12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms