RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 TEKT2Q9UIF3 430 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 PCTPQ9UKL6 214 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 USP9XQ93008 2570 aaPredicted RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 PTPN13Q12923 2485 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 OR5H15A6NDH6 313 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 STX16-NPEPL1H3BU86 382 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 STX16O14662 325 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 SMIM24O75264 130 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 SERPINB1P30740 379 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 PIK3CGP48736 1102 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 HSD17B7P56937 341 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 RPS13P62277 151 aaKnown RBP23.1■■□□□ 1.29
UPF3A-209ENST00000492270 SLC13A2Q13183 592 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 TMEM35AQ53FP2 167 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 DEPDC1Q5TB30 811 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 LGSNQ5TDP6 509 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 METTL2BQ6P1Q9 378 aaKnown RBP23.1■■□□□ 1.29
UPF3A-209ENST00000492270 TIFABQ6ZNK6 161 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 CHSY3Q70JA7 882 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 SRFBP1Q8NEF9 429 aaKnown RBP23.1■■□□□ 1.29
UPF3A-209ENST00000492270 ARMC2Q8NEN0 867 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 ADAMTS18Q8TE60 1221 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 GRHL3Q8TE85 626 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 MTBPQ96DY7 904 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 ZNF354BQ96LW1 612 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 ZBTB26Q9HCK0 441 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 TMCO1Q9UM00 188 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 PCDHGA11Q9Y5H2 935 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 HIVEP3Q5T1R4 2406 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 LRRK2Q5S007 2527 aa23.1■■□□□ 1.29
UPF3A-209ENST00000492270 ZGRF1Q86YA3 2104 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 TRAV17A0A0B4J275 112 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 MYOCOSA0A1B0GUC4 107 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 H0YIV9 168 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 UGDHO60701 494 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 HIST1H1TP22492 207 aaPredicted RBP23.09■■□□□ 1.29
UPF3A-209ENST00000492270 ARL1P40616 181 aaPredicted RBP23.09■■□□□ 1.29
UPF3A-209ENST00000492270 PIK3CBP42338 1070 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 SSR2P43308 183 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 UBAP2LQ14157 1087 aaKnown RBP23.09■■□□□ 1.29
UPF3A-209ENST00000492270 ZNF595Q8IYB9 648 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 L3MBTL4Q8NA19 623 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 ROGDIQ9GZN7 287 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 PNO1Q9NRX1 252 aaKnown RBP23.09■■□□□ 1.29
UPF3A-209ENST00000492270 ANKRD10Q9NXR5 420 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 TMEM216Q9P0N5 145 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 PSMC3IPQ9P2W1 217 aaPredicted RBP23.09■■□□□ 1.29
UPF3A-209ENST00000492270 TBK1Q9UHD2 729 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 ADGRE2Q9UHX3 823 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 MRPS33Q9Y291 106 aaKnown RBP23.09■■□□□ 1.29
UPF3A-209ENST00000492270 TSC22D4Q9Y3Q8 395 aa23.09■■□□□ 1.29
UPF3A-209ENST00000492270 HECTD1Q9ULT8 2610 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 A8MT66 165 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 GOLGA8RI6L899 631 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 CLDN4O14493 209 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 PLPP1O14494 284 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 MYO1DO94832 1006 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 SCELO95171 688 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 CLDN9O95484 217 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 CBX6O95503 412 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 ETHE1O95571 254 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 NEK2P51955 445 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 CCNG1P51959 295 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 TRAF3Q13114 568 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 ZRSR2Q15696 482 aaKnown RBP23.08■■□□□ 1.29
UPF3A-209ENST00000492270 MEP1AQ16819 746 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 EIF2S3LQ2VIR3 472 aaKnown RBP23.08■■□□□ 1.29
UPF3A-209ENST00000492270 AP5B1Q2VPB7 878 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 FAM219BQ5XKK7 198 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 WDR20Q8TBZ3 569 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 ATP6V1E2Q96A05 226 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 LYRM4Q9HD34 91 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 SEMA4BQ9NPR2 832 aaPredicted RBP23.08■■□□□ 1.29
UPF3A-209ENST00000492270 FBXW2Q9UKT8 454 aa23.08■■□□□ 1.29
UPF3A-209ENST00000492270 A0A1B0GTL3 188 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 FOXO6A8MYZ6 492 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 SHBGP04278 402 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 RPS17P08708 135 aaKnown RBP23.07■■□□□ 1.28
UPF3A-209ENST00000492270 RAP1GDS1P52306 607 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 TAS2R50P59544 299 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 TUBA3CQ13748 450 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 OR4C11Q6IEV9 310 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 RPUSD3Q6P087 351 aaKnown RBP23.07■■□□□ 1.28
UPF3A-209ENST00000492270 TUBA3EQ6PEY2 450 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 FAM26EQ8N5C1 309 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 EIF1ADQ8N9N8 165 aaKnown RBP23.07■■□□□ 1.28
UPF3A-209ENST00000492270 MZB1Q8WU39 189 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 TAAR6Q96RI8 345 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 CDCP1Q9H5V8 836 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 AGPAT4Q9NRZ5 378 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 FETUBQ9UGM5 382 aa23.07■■□□□ 1.28
UPF3A-209ENST00000492270 IQANK1A0A1B0GTG1 560 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 LDB3O75112 727 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 TSPAN8P19075 237 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 SLC5A8Q8N695 610 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 APCDD1LQ8NCL9 501 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 UBLCP1Q8WVY7 318 aaPredicted RBP23.06■■□□□ 1.28
UPF3A-209ENST00000492270 RGMAQ96B86 450 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 REPS1Q96D71 796 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 MTFMTQ96DP5 389 aaKnown RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms