RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 EXT1Q16394 746 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 LGSNQ5TDP6 509 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 ATCAYQ86WG3 371 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 BEST3Q8N1M1 668 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 EIF1ADQ8N9N8 165 aaKnown RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 GALNT11Q8NCW6 608 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 ZNF483Q8TF39 744 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 HAS2Q92819 552 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 MTFMTQ96DP5 389 aaKnown RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 MTBPQ96DY7 904 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 CMTM7Q96FZ5 175 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 TBCDQ9BTW9 1192 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 ZNF717Q9BY31 904 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 COPS7BQ9H9Q2 264 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 SEMA4BQ9NPR2 832 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 ANKRD10Q9NXR5 420 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 STMN3Q9NZ72 180 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 PSMC3IPQ9P2W1 217 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 MMACHCQ9Y4U1 282 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 COPG1Q9Y678 874 aaKnown RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 USP9XQ93008 2570 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-214ENST00000490398 CNTRLQ7Z7A1 2325 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 HECTD1Q9ULT8 2610 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 CLEC18AA5D8T8 446 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 SAGE2PA6NJ88 616 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 PLPP1O14494 284 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 VPS4BO75351 444 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 PRKRAO75569 313 aaKnown RBP16.96■□□□□ 0.31
COL9A3-214ENST00000490398 SCELO95171 688 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 CLDN9O95484 217 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 TSFMP43897 325 aaKnown RBP16.96■□□□□ 0.31
COL9A3-214ENST00000490398 SLCO1A2P46721 670 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 VSNL1P62760 191 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 ID2Q02363 134 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 TLR1Q15399 786 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 TMEM35AQ53FP2 167 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 ACER2Q5QJU3 275 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 OR4C11Q6IEV9 310 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 CLEC18BQ6UXF7 455 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 SH2D5Q6ZV89 423 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 CLEC18CQ8NCF0 446 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 UBLCP1Q8WVY7 318 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-214ENST00000490398 BARD1Q99728 777 aaKnown RBP16.96■□□□□ 0.31
COL9A3-214ENST00000490398 PNO1Q9NRX1 252 aaKnown RBP16.96■□□□□ 0.31
COL9A3-214ENST00000490398 FETUBQ9UGM5 382 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 ZNF225Q9UK10 706 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 ZNF223Q9UK11 482 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-214ENST00000490398 FBXW2Q9UKT8 454 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 EMCNQ9ULC0 261 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 VPS4AQ9UN37 437 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 TSC22D4Q9Y3Q8 395 aa16.96■□□□□ 0.31
COL9A3-214ENST00000490398 A0A088AWK7 358 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 IQANK1A0A1B0GTG1 560 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 SMIM23A6NLE4 172 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 WASHC1A8K0Z3 465 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 DLX3O60479 287 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 EEDO75530 441 aaKnown RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 MYO1DO94832 1006 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF10P21506 573 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 SERPINB1P30740 379 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 PIK3CBP42338 1070 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 SSR2P43308 183 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 CCNG1P51959 295 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 HSD17B7P56937 341 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 TGM3Q08188 693 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 SLC13A2Q13183 592 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 NR6A1Q15406 480 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 AP5B1Q2VPB7 878 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 UNC50Q53HI1 259 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF468Q5VIY5 522 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 ABHD17BQ5VST6 288 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 METTL2BQ6P1Q9 378 aaKnown RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 CHSY3Q70JA7 882 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF595Q8IYB9 648 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 OR4F6Q8NGB9 312 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 EPS8L3Q8TE67 593 aaKnown RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 SREK1Q8WXA9 508 aaKnown RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 UCN3Q969E3 161 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 ATP6V1E2Q96A05 226 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 TAAR6Q96RI8 345 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 NTMT1Q9BV86 223 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 HES7Q9BYE0 225 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 CDCP1Q9H5V8 836 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 LYRM4Q9HD34 91 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.95■□□□□ 0.33e-17■□□□□ 11.3
COL9A3-214ENST00000490398 TMCO1Q9UM00 188 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 PCDHGA11Q9Y5H2 935 aa16.95■□□□□ 0.3
COL9A3-214ENST00000490398 V9GYY5 206 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 UTP20O75691 2785 aaKnown RBP16.95■□□□□ 0.3
COL9A3-214ENST00000490398 LRRK2Q5S007 2527 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 DYTNA2CJ06 578 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 OR5H15A6NDH6 313 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 PRKNO60260 465 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 UGDHO60701 494 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 CTNSO60931 367 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 LDB3O75112 727 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 HPDP32754 393 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 BSGP35613 385 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 ARL1P40616 181 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 HNRNPH2P55795 449 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms