RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 LIN37Q96GY3 246 aaPredicted RBP6.34□□□□□ -1.39
USP48-208ENST00000479177 FCRL1Q96LA6 429 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 TRAPPC9Q96Q05 1148 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 LRRC37BQ96QE4 947 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 CD180Q99467 661 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 SERPINI1Q99574 410 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 C1orf50Q9BV19 199 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 MS4A8Q9BY19 250 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 BRINP2Q9C0B6 783 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 KLHL25Q9H0H3 589 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 ARMCX1Q9P291 453 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 PILRAQ9UKJ1 303 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 G3BP2Q9UN86 482 aaKnown RBP6.34□□□□□ -1.39
USP48-208ENST00000479177 SLC12A4Q9UP95 1085 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 BTBD3Q9Y2F9 522 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 POLR3HQ9Y535 204 aaPredicted RBP6.34□□□□□ -1.39
USP48-208ENST00000479177 AP1M2Q9Y6Q5 423 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 CAPN7Q9Y6W3 813 aa6.34□□□□□ -1.39
USP48-208ENST00000479177 PTPRZ1P23471 2315 aaPredicted RBP6.34□□□□□ -1.39
USP48-208ENST00000479177 SEC16AO15027 2179 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 COL27A1Q8IZC6 1860 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 EME2A4GXA9 379 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 ZNF503-AS2A6NEH8 195 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ANKDD1BA6NHY2 528 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 CDX4O14627 284 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 SLC22A2O15244 555 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 P2RX6O15547 441 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 FLRT2O43155 660 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 NDUFS4O43181 175 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 B4GAT1O43505 415 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 OR1F1O43749 312 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 KIF1CO43896 1103 aaKnown RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 LCMT2O60294 686 aaKnown RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 PRAMEF10O60809 474 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 LRP3O75074 770 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 C9P02748 559 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 CKMT1AP12532 417 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 IDO1P14902 403 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ST6GAL1P15907 406 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 CDH3P22223 829 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 PIK3R1P27986 724 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 CD1CP29017 333 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ALDH4A1P30038 563 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 GRK3P35626 688 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 GRK6P43250 576 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 DIO3P55073 304 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 STX1BP61266 288 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 IRX1P78414 480 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 EMX2Q04743 252 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 TBL3Q12788 808 aaKnown RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 KLF10Q13118 480 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 MAD2L1Q13257 205 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 CUL3Q13618 768 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 KRT72Q14CN4 511 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 KIAA0040Q15053 153 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 GSTA3Q16772 222 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 AP5B1Q2VPB7 878 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 KRTAP19-4Q3LI73 84 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ADPRMQ3LIE5 342 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 AMZ1Q400G9 498 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 RFTN2Q52LD8 501 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 PDCD4Q53EL6 469 aaKnown RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 NKAIN2Q5VXU1 208 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 DBX2Q6ZNG2 339 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 FAM92BQ6ZTR7 304 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 COMMD6Q7Z4G1 85 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 PRSS42Q7Z5A4 293 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 CARFQ8N187 725 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 METTL4Q8N3J2 472 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ZNF655Q8N720 491 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 Q8N9G6 341 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 FNDC5Q8NAU1 212 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ATOH1Q92858 354 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 ZUFSPQ96AP4 578 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 C11orf24Q96F05 449 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 AHCYL2Q96HN2 611 aaKnown RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 METTL2AQ96IZ6 378 aaKnown RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 SLC45A3Q96JT2 553 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 DHRS1Q96LJ7 313 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 TGM7Q96PF1 710 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 FCRL4Q96PJ5 515 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 OR2A5Q96R48 311 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 MAP3K3Q99759 626 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ZFYVE21Q9BQ24 234 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 G6PC3Q9BUM1 346 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 EDEM2Q9BV94 578 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 CCDC106Q9BWC9 280 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ZNF717Q9BY31 904 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 MRPL1Q9BYD6 325 aaKnown RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 AICDAQ9GZX7 198 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 OR51B5Q9H339 312 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 PARD6AQ9NPB6 346 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 SDR39U1Q9NRG7 319 aaPredicted RBP6.33□□□□□ -1.4
USP48-208ENST00000479177 MRGBPQ9NV56 204 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 TMEM9Q9P0T7 183 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 VPS29Q9UBQ0 182 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 TCFL5Q9UL49 500 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 DLGAP4Q9Y2H0 992 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 ZNF281Q9Y2X9 895 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 TMED5Q9Y3A6 229 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms