RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HOXD4P09016 255 aaPredicted RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 HMOX1P09601 288 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 KRT3P12035 628 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 GP9P14770 177 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SRD5A2P31213 254 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 CASP3P42574 277 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 OR3A3P47888 321 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 ZFP36L2P47974 494 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SERPINH1P50454 418 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 ACTN3Q08043 901 aaPredicted RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 PPP2R5CQ13362 524 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SGCBQ16585 318 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 AARDQ4LEZ3 155 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 ARMCX4Q5H9R4 360 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 AGAP6Q5VW22 663 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 PRAMEF8Q5VWM4 474 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 RSBN1Q5VWQ0 802 aaPredicted RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 CES4AQ5XG92 561 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SIGLEC15Q6ZMC9 328 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 FRRS1Q6ZNA5 592 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 ASPGQ86U10 573 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC25A42Q86VD7 318 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 KCNMB4Q86W47 210 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 ABHD12Q8N2K0 398 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SFRP1Q8N474 314 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 TCEANCQ8N8B7 351 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SMYD1Q8NB12 490 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SNX21Q969T3 373 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 PDLIM5Q96HC4 596 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 CABS1Q96KC9 395 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 C2orf48Q96LS8 159 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 CCDC43Q96MW1 224 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 FAM218AQ96MZ4 157 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 TDRD1Q9BXT4 1180 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 MRPL9Q9BYD2 267 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 OSBPL8Q9BZF1 889 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC39A8Q9C0K1 460 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 DPEP2Q9H4A9 486 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 GPR173Q9NS66 373 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SPG21Q9NZD8 308 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 TRPC4Q9UBN4 977 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 STX8Q9UNK0 236 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 ITM2BQ9Y287 266 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 WIPI2Q9Y4P8 454 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SNX5Q9Y5X3 404 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 NPHP3Q7Z494 1330 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 A0A087X0K7 114 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 TRIM64A6NGJ6 449 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 GLTPD2A6NH11 291 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 TRIM64BA6NI03 449 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 SRRM4A7MD48 611 aaKnown RBP2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 KRTAP4-16G5E9R7 235 aaPredicted RBP2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 POP4O95707 220 aaKnown RBP2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 AADACP22760 399 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 ETV5P41161 510 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 HNRNPA3P51991 378 aaKnown RBP2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 KIAA1024LP59773 190 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 RPP38P78345 283 aaKnown RBP2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 NDPQ00604 133 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC34A1Q06495 639 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 CDH18Q13634 790 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 MTF1Q14872 753 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 PPA1Q15181 289 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 RPS6KA1Q15418 735 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 TAB1Q15750 504 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 MS4A18Q3C1V0 323 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 C2orf76Q3KRA6 126 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 FGD3Q5JSP0 725 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 LCLAT1Q6UWP7 414 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 CATSPERDQ86XM0 798 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 ZBED8Q8IZ13 594 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 SPC24Q8NBT2 197 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 KLHL30-AS1Q8NEE0 82 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 LPCAT1Q8NF37 534 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 CD99L2Q8TCZ2 262 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 ST7LQ8TDW4 575 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 BCL2L2Q92843 193 aaPredicted RBP2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 EPSTI1Q96J88 318 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 HEXA-AS1Q9H8Q6 139 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 RNPEPL1Q9HAU8 725 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 MID1IP1Q9NPA3 183 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 PNPLA3Q9NST1 481 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 EXOC1Q9NV70 894 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 NYAP2Q9P242 653 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 POLKQ9UBT6 870 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 FBXW2Q9UKT8 454 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 SATB2Q9UPW6 733 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 ZNF510Q9Y2H8 683 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 TMED7Q9Y3B3 224 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 SELENOKQ9Y6D0 94 aa2.45□□□□□ -2.02
CCDC88A-212ENST00000474059 NEDD4P46934 1319 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 ABCC9O60706 1549 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 A0A087WZ39 114 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 FAM149AA5PLN7 773 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 C5orf51A6NDU8 294 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 ZNF732B4DXR9 585 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 M0R296 226 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 MAGEB2O15479 319 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 GPRIN2O60269 458 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 KERAO60938 352 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms