RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MFSD4BQ5TF39 518 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 CES4AQ5XG92 561 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 MRM1Q6IN84 353 aaKnown RBP11.26□□□□□ -0.61
VPS13D-204ENST00000469054 SCIMPQ6UWF3 145 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 KIRREL2Q6UWL6 708 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 TRIM46Q7Z4K8 759 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 MRGPREQ86SM8 312 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 NUDT13Q86X67 352 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 METTL4Q8N3J2 472 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 PLPP5Q8NEB5 264 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 MAPKAP1Q9BPZ7 522 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 MRPL1Q9BYD6 325 aaKnown RBP11.26□□□□□ -0.61
VPS13D-204ENST00000469054 ACPTQ9BZG2 426 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 P4HTMQ9NXG6 502 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 KCMF1Q9P0J7 381 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 ADAM29Q9UKF5 820 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 MAN2B2Q9Y2E5 1009 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 FIS1Q9Y3D6 152 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 TRAF6Q9Y4K3 522 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 HS3ST3B1Q9Y662 390 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 FER1L5A0AVI2 2057 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 OR2W5A6NFC9 320 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 CYR61O00622 381 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 CLDN4O14493 209 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 SOCS6O14544 535 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 ITM2AO43736 263 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 TMPRSS11DO60235 418 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 LYPLA1O75608 230 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-204ENST00000469054 SNUPNO95149 360 aaKnown RBP11.25□□□□□ -0.61
VPS13D-204ENST00000469054 HSPA4LO95757 839 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 CHEK2O96017 543 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 KLK1P06870 262 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 CPN2P22792 545 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 SLC1A6P48664 564 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 HMGCS1Q01581 520 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 RHAGQ02094 409 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 RHDQ02161 417 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 STX3Q13277 289 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 ATP1A4Q13733 1029 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 TBR1Q16650 682 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 UGT3A2Q3SY77 523 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 SH2D4BQ5SQS7 431 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 KANK2Q63ZY3 851 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 FAAH2Q6GMR7 532 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 CYP20A1Q6UW02 462 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 TMEM205Q6UW68 189 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 QSOX2Q6ZRP7 698 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 RNF165Q6ZSG1 346 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 PAGE2Q7Z2X7 111 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 CHTF18Q8WVB6 975 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 METTL21AQ8WXB1 218 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 APIPQ96GX9 242 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 VPS50Q96JG6 964 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 PTCHD1Q96NR3 888 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 ZNF395Q9H8N7 513 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-204ENST00000469054 RYDENQ9NUL5 291 aaKnown RBP11.25□□□□□ -0.61
VPS13D-204ENST00000469054 MS4A12Q9NXJ0 267 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 ZDHHC2Q9UIJ5 367 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 FBXW2Q9UKT8 454 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 MRPS33Q9Y291 106 aaKnown RBP11.25□□□□□ -0.61
VPS13D-204ENST00000469054 DNAJC15Q9Y5T4 150 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 SPACA6W5XKT8 324 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 PTPRQQ9UMZ3 2332 aa11.25□□□□□ -0.61
VPS13D-204ENST00000469054 LOC102723996A0A087X1L8 192 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 A0A1W2PQ72 361 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ARHGAP10A1A4S6 786 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ARGFXA6NJG6 315 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 TMEM233B4DJY2 109 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 SLC28A1O00337 649 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ATP8B1O43520 1251 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 PRMT3O60678 531 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 RSL1D1O76021 490 aaKnown RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 GBAP04062 536 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 FAM58BPP0C7Q3 252 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 C8orf89P0DMQ9 161 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ACPPP15309 386 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 TPP2P29144 1249 aaPredicted RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 RRADP55042 308 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 BTG2P78543 158 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 BST1Q10588 318 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 NSDHLQ15738 373 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 IMPG1Q17R60 797 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 CCNYL2Q5T2Q4 361 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 BORAQ6PGQ7 559 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 COMMD6Q7Z4G1 85 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 GPR180Q86V85 440 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 TRIM42Q8IWZ5 723 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ZNF595Q8IYB9 648 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 C1orf52Q8N6N3 182 aaKnown RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 TMEM102Q8N9M5 508 aaPredicted RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 FAM47BQ8NA70 645 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 TMEM52Q8NDY8 209 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 OR11G2Q8NGC1 345 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 AGR3Q8TD06 166 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 APOBEC4Q8WW27 367 aaKnown RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 EXTL1Q92935 676 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 C8orf44Q96CB5 159 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 FER1L6-AS2Q96M78 137 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 CSF3RQ99062 836 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 MESP1Q9BRJ9 268 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms