RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 UBE3DQ7Z6J8 389 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 MILR1Q7Z6M3 343 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 CUZD1Q86UP6 607 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 ACOT4Q8N9L9 421 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 CCDC63Q8NA47 563 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 OR1N1Q8NGS0 311 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 TRPC4APQ8TEL6 797 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 RGMAQ96B86 450 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 C19orf60Q96EN9 201 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 PRDM7Q9NQW5 492 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 ADGRE2Q9UHX3 823 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 DAPP1Q9UN19 280 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 VPS4AQ9UN37 437 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 SPACA6W5XKT8 324 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 MYO1DO94832 1006 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 RPS17P08708 135 aaKnown RBP17.52■□□□□ 0.4
USP39-209ENST00000458268 SOX11P35716 441 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 TAS2R50P59544 299 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 IFFO1Q0D2I5 559 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 STX4Q12846 297 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 TRAF3Q13114 568 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 RCN2Q14257 317 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 ZNF169Q14929 603 aaPredicted RBP17.52■□□□□ 0.4
USP39-209ENST00000458268 DEPDC1Q5TB30 811 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 Q6ZS92 163 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 KIF2BQ8N4N8 673 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 OR4F6Q8NGB9 312 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 ADAMTS18Q8TE60 1221 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 MIB2Q96AX9 1013 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 ZBTB26Q9HCK0 441 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 ANKRD10Q9NXR5 420 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 FETUBQ9UGM5 382 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 TEKT2Q9UIF3 430 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 MMACHCQ9Y4U1 282 aa17.52■□□□□ 0.4
USP39-209ENST00000458268 TCRBV16S1A1N1A0A5B0 115 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 PPP6CO00743 305 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 DLX3O60479 287 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 UGDHO60701 494 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 LDB3O75112 727 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 WDPCPO95876 746 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 GBAP04062 536 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 HIST1H1TP22492 207 aaPredicted RBP17.51■□□□□ 0.39
USP39-209ENST00000458268 PIK3CBP42338 1070 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 IFT88Q13099 833 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 SLAMF1Q13291 335 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 E2F2Q14209 437 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 OR4C11Q6IEV9 310 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 CRLF3Q8IUI8 442 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 C4orf33Q8N1A6 199 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 BEST3Q8N1M1 668 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 CCNYL1Q8N7R7 359 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 L3MBTL4Q8NA19 623 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 M1APQ8TC57 530 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 ACMSDQ8TDX5 336 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 ZNF483Q8TF39 744 aaPredicted RBP17.51■□□□□ 0.39
USP39-209ENST00000458268 THAP3Q8WTV1 239 aaPredicted RBP17.51■□□□□ 0.39
USP39-209ENST00000458268 LMF1Q96S06 567 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 ELOVL6Q9H5J4 265 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 ASF1BQ9NVP2 202 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 STMN3Q9NZ72 180 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 ABI3Q9P2A4 366 aa17.51■□□□□ 0.39
USP39-209ENST00000458268 A0A1B0GTL3 188 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 SAGE2PA6NJ88 616 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 H0YIV9 168 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 TGFBR3LH3BV60 316 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 PLPP1O14494 284 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 GLRA3O75311 464 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 OR4F21O95013 312 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 ETHE1O95571 254 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 OTCP00480 354 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 TNNI3P19429 210 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 ATP5F1P24539 256 aaPredicted RBP17.5■□□□□ 0.39
USP39-209ENST00000458268 PTX3P26022 381 aaPredicted RBP17.5■□□□□ 0.39
USP39-209ENST00000458268 UQCRFS1P47985 274 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 HSD17B7P56937 341 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 TLR1Q15399 786 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 ERCC6LQ2NKX8 1250 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 METTL2BQ6P1Q9 378 aaKnown RBP17.5■□□□□ 0.39
USP39-209ENST00000458268 CYP20A1Q6UW02 462 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 OR4N5Q8IXE1 308 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 ZNF595Q8IYB9 648 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 MZB1Q8WU39 189 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.5■□□□□ 0.39
USP39-209ENST00000458268 SNRNP40Q96DI7 357 aaKnown RBP17.5■□□□□ 0.39
USP39-209ENST00000458268 ZNF354BQ96LW1 612 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 TMEM237Q96Q45 408 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 HBEGFQ99075 208 aa17.5■□□□□ 0.39
USP39-209ENST00000458268 C12orf65Q9H3J6 166 aaKnown RBP17.5■□□□□ 0.39
USP39-209ENST00000458268 COPG1Q9Y678 874 aaKnown RBP17.5■□□□□ 0.39
USP39-209ENST00000458268 SHANK1Q9Y566 2161 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 IGKV3D-11A0A0A0MRZ8 115 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 TRBV11-1A0A0K0K1C0 115 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 ARHGAP10A1A4S6 786 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 COPEO14579 308 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 MAN1A2O60476 641 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 PRKRAO75569 313 aaKnown RBP17.49■□□□□ 0.39
USP39-209ENST00000458268 GSTA1P08263 222 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 MYL2P10916 166 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 GNLYP22749 145 aa17.49■□□□□ 0.39
USP39-209ENST00000458268 HERVK_113P63132 956 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms