RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 FAM227AF5H4B4 570 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 CYR61O00622 381 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 DLX3O60479 287 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 KRT15P19012 456 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 PTX3P26022 381 aaPredicted RBP16.27■□□□□ 0.2
USP39-208ENST00000455732 HSD17B7P56937 341 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 OR4D2P58180 307 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 MFAP5Q13361 173 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 CUL3Q13618 768 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 DDX39BQ13838 428 aaKnown RBP16.27■□□□□ 0.2
USP39-208ENST00000455732 ZNF678Q5SXM1 525 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 PAPD4Q6PIY7 484 aaKnown RBP16.27■□□□□ 0.2
USP39-208ENST00000455732 SLC22A9Q8IVM8 553 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 ZNF595Q8IYB9 648 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 CYP4X1Q8N118 509 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 MREGQ8N565 214 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 EFCAB3Q8N7B9 438 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 AMER2Q8N7J2 671 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 GALNT11Q8NCW6 608 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 ARMC2Q8NEN0 867 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 M1APQ8TC57 530 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 BRIX1Q8TDN6 353 aaKnown RBP16.27■□□□□ 0.2
USP39-208ENST00000455732 CDK15Q96Q40 435 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 TMEM237Q96Q45 408 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 LMF1Q96S06 567 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 MTERF1Q99551 399 aaKnown RBP16.27■□□□□ 0.2
USP39-208ENST00000455732 LPAR4Q99677 370 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 OR51B5Q9H339 312 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 EPS8L2Q9H6S3 715 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 MMP25Q9NPA2 562 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 SEMA4BQ9NPR2 832 aaPredicted RBP16.27■□□□□ 0.2
USP39-208ENST00000455732 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.27■□□□□ 0.2
USP39-208ENST00000455732 EMCNQ9ULC0 261 aa16.27■□□□□ 0.2
USP39-208ENST00000455732 V9GYY5 206 aaPredicted RBP16.27■□□□□ 0.2
USP39-208ENST00000455732 ZGRF1Q86YA3 2104 aa16.27■□□□□ 0.19
USP39-208ENST00000455732 BLACEA4D250 179 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 SMIM23A6NLE4 172 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 SEMA3DO95025 777 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 CELA2AP08217 269 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 ITGAMP11215 1152 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 MAOAP21397 527 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 CRHR1P34998 444 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 SSR2P43308 183 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 UQCRFS1P47985 274 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 PRKAA2P54646 552 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 RPS13P62277 151 aaKnown RBP16.26■□□□□ 0.19
USP39-208ENST00000455732 BTG2P78543 158 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 SRSF1Q07955 248 aaKnown RBP eCLIP16.26■□□□□ 0.193e-6■■■■■ 29.6
USP39-208ENST00000455732 ERCC6LQ2NKX8 1250 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 AP5B1Q2VPB7 878 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 FRG2Q64ET8 278 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 CUZD1Q86UP6 607 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 IQCKQ8N0W5 287 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 ZCCHC7Q8N3Z6 543 aaKnown RBP16.26■□□□□ 0.19
USP39-208ENST00000455732 RNF175Q8N4F7 328 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 ACOT4Q8N9L9 421 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 MYRIPQ8NFW9 859 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 RGMAQ96B86 450 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 L3HYPDHQ96EM0 354 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 FRG2BQ96QU4 278 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 ZNF717Q9BY31 904 aaPredicted RBP16.26■□□□□ 0.19
USP39-208ENST00000455732 NECTIN3Q9NQS3 549 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 KCMF1Q9P0J7 381 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 RAB21Q9UL25 225 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 CLDN16Q9Y5I7 305 aa16.26■□□□□ 0.19
USP39-208ENST00000455732 USP9YO00507 2555 aaPredicted RBP16.26■□□□□ 0.19
USP39-208ENST00000455732 RTCAO00442 366 aaKnown RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 CLDN4O14493 209 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 PLPP1O14494 284 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 VPS4BO75351 444 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 IMPDH1P20839 514 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 ARL1P40616 181 aaPredicted RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 CCT5P48643 541 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 RAP1GDS1P52306 607 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 HNRNPFP52597 415 aaKnown RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 CDH13P55290 713 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 SLC26A5P58743 744 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 CLCQ05315 142 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 SLC18A2Q05940 514 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 ACTN3Q08043 901 aaPredicted RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 TERF2Q15554 542 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 BTBD16Q32M84 506 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 CCDC153Q494R4 210 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 UNC50Q53HI1 259 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 OR4C11Q6IEV9 310 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 H3F3CQ6NXT2 135 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 LETMD1Q6P1Q0 360 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 RPS27LQ71UM5 84 aaKnown RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 MILR1Q7Z6M3 343 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 FAM47BQ8NA70 645 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 TMEM52Q8NDY8 209 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 OR4F6Q8NGB9 312 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 OR2W6PQ8NHA6 318 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 SNRNP40Q96DI7 357 aaKnown RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 CCDC126Q96EE4 140 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 C19orf60Q96EN9 201 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 ZNF382Q96SR6 550 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 CSF3RQ99062 836 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 PARD6BQ9BYG5 372 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 ROPN1BQ9BZX4 212 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms