RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 THEGLP0DJG4 465 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 GCSHP23434 173 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SLC26A5P58743 744 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 CDK6Q00534 326 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 GRIK4Q16099 956 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ELOA3BQ3SY89 546 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ELOA3Q8NG57 546 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 OR2T35Q8NGX2 323 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SUN3Q8TAQ9 357 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TMEM203Q969S6 136 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 APOLD1Q96LR9 279 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TMEM68Q96MH6 324 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TOR3AQ9H497 397 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TMEM181Q9P2C4 612 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 CDRT1O95170 752 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PRKCAP17252 672 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RAB1AP62820 205 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ZNF763Q0D2J5 394 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TLR1Q15399 786 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 DGLUCYQ7Z3D6 616 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 COMMD7Q86VX2 200 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RDH10Q8IZV5 341 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SENP8Q96LD8 212 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ACO2Q99798 780 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 GPR88Q9GZN0 384 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 EIF5A2Q9GZV4 153 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 BCKDHAP12694 445 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 GPR176Q14439 515 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PXDC1Q5TGL8 231 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 STT3BQ8TCJ2 826 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SLC35F5Q8WV83 523 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PYCR2Q96C36 320 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 NIPSNAP3BQ9BS92 247 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PARP4Q9UKK3 1724 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 NUP214P35658 2090 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 TCRBV5S4A2TA0A5A2 114 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PCDH8O95206 1070 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 AVPR1BP47901 424 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TLE2Q04725 743 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TOMM20Q15388 145 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RAB11BQ15907 218 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 OGFOD2Q6N063 350 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RBMS3Q6XE24 437 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 B3GLCTQ6Y288 498 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 NPAS3Q8IXF0 933 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ALPK1Q96QP1 1244 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ACBD6Q9BR61 282 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TYROBPO43914 113 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TOX4O94842 621 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ACTR1BP42025 376 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SERINC3Q13530 473 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 DUSP7Q16829 419 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 MBLAC2Q68D91 279 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 BLOC1S3Q6QNY0 202 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ZNF704Q6ZNC4 412 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 SSX9Q7RTT3 188 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PIGZQ86VD9 579 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 LRFN5Q96NI6 719 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 CA5BQ9Y2D0 317 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ETV7Q9Y603 341 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SMIM35A0A1B0GVV1 85 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 A0A1W2PS29 197 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 C2CD4BA6NLJ0 364 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 AP1G1O43747 822 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 BEST1O76090 585 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 EVX2Q03828 476 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 NPRL3Q12980 569 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 LAPTM4AQ15012 233 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 LYRM7Q5U5X0 104 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 MYLIPQ8WY64 445 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 GATA6Q92908 595 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TRIM43Q96BQ3 446 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 RBP7Q96R05 134 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RBFOX1Q9NWB1 397 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 PPM1HQ9ULR3 514 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ICKQ9UPZ9 632 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 UBIAD1Q9Y5Z9 338 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TRIOBPQ9H2D6 2365 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 MT-CO1P00395 513 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 EGFP01133 1207 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 UQCRC2P22695 453 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 NKX3-2P78367 333 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ARSHQ5FYA8 562 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RNASE10Q5GAN6 216 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 PGM2L1Q6PCE3 622 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PLEKHH3Q7Z736 793 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ZNF808Q8N4W9 903 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 KLHDC1Q8N7A1 406 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 NPLQ9BXD5 320 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 DNTTIP1Q9H147 329 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RSPH9Q9H1X1 276 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 ABCG8Q9H221 673 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 MGAT4CQ9UBM8 478 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ASF1AQ9Y294 204 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 LRRC72A6NJI9 287 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 C12orf71A8MTZ7 269 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SEC14L5O43304 696 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 USP17L7P0C7H9 530 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 KCNJ11Q14654 390 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 COL13A1Q5TAT6 717 aaPredicted RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms